MmuINT0162650 @ mm10
Intron Retention
Gene
ENSMUSG00000048764 | Tmprss11f
Description
transmembrane protease, serine 11f [Source:MGI Symbol;Acc:MGI:2442348]
Coordinates
chr5:86521898-86528302:-
Coord C1 exon
chr5:86528160-86528302
Coord A exon
chr5:86524171-86528159
Coord C2 exon
chr5:86521898-86524170
Length
3989 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGGAGTTTTTTCTATTCCAGGGT
3' ss Score
7.99
Exon sequences
Seq C1 exon
GGCCTACACAAAATAAACTCCGGCAGGCCAGGGTGGAAACCATAGGTTCTGATGTGTGCAACAGAAAGGATGTATACGATGGCTTGATAACTCCAGGGATGCTGTGCGCTGGATTCATGGAAGGAAAAATAGATGCATGTAAG
Seq A exon
GTAAGTTGCAAGTCAAAACCAAACCTTCTAAAGGAAGTTTCATTATATACTTCTGAGCTTGGCATGTGCTCATGGGGCAATTGTATTGAGTGTTTGGTGTGCATTAACTCAAAGTAAAGCACTGTTAGTGTGTAGCATTTCATTCACTGCAGTAGATACATGCAACACTATCATTTCCCCATTTTCCATACTAGAAAATGAAAGTCAAAGGTCCCCTCTTTTGGTCCACACAGTTACTTTATGCTTCATTACTTTTTCCTTCTTCTATTTTTTTTCCTTTGTGGAAGGGAGTGGGAGATTGAGACAGCGTCTCCTATAGCAGGTGTCCAGGTCAGTCTCTAACTTGCTATGTAGCTGAGGATGACCTTGAACTCTTGATCTTCGTTTCTACACTACCCAAGTGCTGGGGCTATAAGAGTGCACAACCATGCTTGACTTCATTCTTTTCTGGAAGAACTGCTCCTCTGAATGACTTAATTTTCTTGGAGCCCCTTTACCCAGAATTAGAAGGCAGGTTTCTTTTGCCAGGCATTGAGAGTTTGGTTAGTGTATGGTGCTTGAAGGAACATTTCACCCTATGTAGTAAAGTCCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGGTGTGTGGTGTGTGTGTTATAAATGCATGTACATGCATGTGCATATATGTGTGTGTGTGCATGCATGCGTATGCATATGTGTATGCATGTGTGTGTATGGTGTTTAAGAGAGCTTACAAAATATTATATTATAAAATAATATATTTTCTGTGACCTTTCAAACACCTTCAGAGTTATTTATCTCTCTGTTCTGTCTCTCCCTCTGTATTATTCTTTCCCACCCTACAATTAGGTATCCCTCCTCATTTCCACATTTCCTCCTTCATAAGAGATTCTTCAGAGCTAGATCCCCTACCCTCCATGTTCCATTTGTATTCTCCTGACTTCTGTGGTCACTCCAGGTTATATCCTCGGATCTAAAGATTCATAGCTAAAATCCACAAATAAGACAGGTCAGGTTATTTCACTCAGAACATTTTCCATCTATTTATCAGAGGCATTCATGATTTTCTGTTACTTTATTGCCTAGTAGAATCCCATTGTAGCACATTTTTATTATTCATTATTGAGTAGGACATTTAGTCTGCCTCTGTTTTCTATCTATCATGAATAGAGTGCTCCTTTTTTGTTGTTTATCTATTATATATTTTATATATTTATGTTCTTTACTTTATTTTCTTCTGCTTGCCAAGTTTGACCTTGATTTGTTCAGTTTTATCCCTTTTCACAGAATAATGTTATATTTAATTAAGATCTTTGTTCTTTATTCTGATCTAGCCATGCAATAAGTAAGTTTCCCTAAGCTTCTATTTTCCATGTACCCTATAAGGTTTTGGAATTCTGTTTCAATTTTTGTTTGTCTCAAAACAAAAGTATTTTATTAATGTCTTTTTATCCTATTTTTGTGAATTTGTACAAATTTTTTTTCTCATTGATTGACCTATAATTCCAAGTCACTCTGGTTCCAGGGAGGCCTCTGTAAATCACCTATTCTCTATGATTCAACCCTCCTTCTCCACTCAAGTTTCTGCTTTCACTGATCATTAGAGGGAGGTTCACCCTAGCTCTGTGTCTCTTATAGTTAACATTTACCTCACAACTGGTTCTGTTTTATTATTGTTGTTACATGTCTTGGGCAAAAATATTTTGACCCAGATGCTGTTTGCTAGAACCCTACTTTGTGGCTTTATGTGATATTTGGAAAGAACATCTATGTCTGTTTTCTCTATTCCTCATGTTCTTCCAGTGCTTTCAACAAGCAGTATTGGGTCTTCTCTGTTATTTTCTCCAAAGAGTTCTTGCTATTGACTCATGAGTCACATCAATGCTAAATTCTAACAGTCATCTTTGACAGTTCTTAAAAAACCAAACCAAACCAAACAAACAAACAAACAAAAAAACCCAACAACTTAAGAACAGCATTTAATAATGCTTATTTCTCCCTTTCTTAAGGCATGGTCTTCTTCTGATTCTGAATTATTTCCATCCATTTTTCTCTGCATACCCCATGTCAAATTGCTAATTGAATCTGATGGATTTATTTTTTACCTTTGTGATAACTTCTCTCTCACCAGTTCTCCATTGCACCACCACTCTCTCTTTCCTCTTAACACTCCTCACTGGCCACCTCGTTTTCACTTTAGTACTCCTTTAGTGCATTTGTCAGATAAATTCAGCAATATTTATAGGATGCTGCTCTAGTTTATCAAATGCATCATTAACATATTTCAGTGACCACATTTTGTTCTTAAAAATACAAAGCCAAGCTTTCTAAACAAAGTGCACAATGTTTCATAGTAACTCCTGGCCCTATTCACCAGCCACCACACATATCACTGAACTCCCCTTGTTATTTTCCTTACACCTCCAATACTATCTTTTTCATCCTTGCATAGGATAGATTCCTACATACCTCAGAGCCTTAGCAAAAATGTTCCCCCTGTCCAAGGTACCTTACATTACTACTTTCTGATACACAGTCAACATCTCTACTTTCTCATATCGACATAATTATATTTCCCAGAAATGTATAGGGAAAAATCCACCCTGAAAAATCATACATATTCATATTGTATGTTTCTCTGCCAGTTACCATAGTTATTGTTTGTCTCTTTGGGGAGCTTACTTAAATACTAGCCTATTTAATCTATACCCCAAGCACTGTTAGCATAATGAAGCTTTCATTTTTGGATCATCATTCTATCCCCAGTAACTGCCAGAATGTGTTGGGCATGTAATCAGAACTAAATCCATAGTTGTAAGACTATATGGGAGAGGTTAGAAATGGCTTACTGATTAAAAGTTCCTAGGCTCTTCTAGAACACCTGAGTTTGGATCCCAGCACCCATCTTAGGCTGCCCGCACTCAGTAACTTCAGCTCCAGGGAATCCAGTGTCTTCTGCTGAACTCTACAGACACCTGCACATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCACCCTCCTCCTTGTTTCCCTCTCCTTTGTCTCCCTCTCCCTTGTCTCTCCCTGGCCTCTCTGTTTCACTCTCCCTTGACTTCCTCTCCCTCTTCCTCCCCTTCTCCCTTGTCTCCTTCTCCATTCCCCCATCATATATCATTTTGCAACATGAGTAAATGGAAGAAAAAAGTAAAAGATGCAAAAAAAAGTTAAAATATTTTATAAAACCTTGCACGTGATTGACAGAACTGGGCCTAAAACTTGGGCATTTTAACATCTGAGAACATATTTTTACCTTCTATAACAGCATCTGTCTATTTAATCGTCCTCTTTACATGAAAGAGATAAAGGAACATTTATTTTTTTAAAGATTTATTTATTTTATATATATGAGTACACTATAGCTGTACAGGTTGCTGGGATTTGAACTCAAGTCCTTCGGAAGAGCAGTCAGTGCTCTTACCCGCTGAGCCATCTCTCCAGCTCTAAAGGAACATTTATAATTCAGTAAGAACATATAAATTAGAAGTAGATGAGTATAAGAAAAAGAGACCAAGATCTGGGCAATGGAGTGTAGTCAGATCAGTGGTCTTCAGAAGCAATATTTGAAATTTTCTCTTTACTATGATACATGATAGTCTCATATGTAACATTTTATGTGAAAATACTGTTCACAAATCATAAAATATATGTAGAACATGTCTAACCAAACAAATAAAAGTAGGATGATAAGCCAGAAATAATATAATCATTCCACATGAATGATGATTGGTCTTTCTACTGAAAAAGAAAACGTACTTTGAGGTTCAACTCAATAGAAAGACATACAGTCTATTAACAGACTGTCCATTTAACAATAATTTCTTTTCTTGTGTTTCTTCTTTTTCTTCTTTTGGAGGATAAAGTCTGTGGGAAAGAGATGATTATTATGATATTGATTGGAGTTTTTTCTATTCCAG
Seq C2 exon
GGTGATTCTGGTGGACCTTTGGTTTATGACAATCGGGACATCTGGTACATTGTGGGCATAGTAAGTTGGGGACAATCTTGTGCTCTTCCAAACAAGCCTGGAGTCTACACAAGAGTGACTAAGTATCGAGACTGGATAGCCTCCAAGACTGGCCTCTAAAGTATACTGTTGTGAGTGATGGCCATAGCCCACGAAGCAGGATACCTGCAGATTGTACAGTATTACTTAGAGAGTTGTGAGCTACAGTCACAGCCCATGGAACAGGATGCCTGCAGATAGTACATTATGCGCATTGTTACTTAGAGTCATTGGGGGTAAATGAGTGCTTCTGCCAGATGTGAAGGACTCTTCAGATGGAGACCAATTTAATAACATGAGGTGACTTTTTGTGCATAAACTTTACCAAGAAGGAAGAAAACTTAGCAAATGACAGGCAGCACCAGCATCTCACTCGTAAAGGTGACTCCTTAATGTGACAAACATAAATAGCTTCCCTCAGGATATAAAGAGCTGCCAAGCTGCTATGATCTTACCTCATATAATGCATAGAGCTCCAGGACTCATCTTACAAATGTCAGCTAGCATCTTCCTTAAGGATTCAAGACACAAGCATTTTAGAACTCATAACTGGACATTCAACTGCTACAATGAAGGAGTGTGTAACCTGCAGTAAAACTTGAACTCTAACCTGCATTTGCAGCTGACCGAGCAGAGCTTTATTCTCAACCACAGGAACTGTCATTATTTAAATGCATATGAACTTGCCATTATACTATATAATGTCCTAAAACAGTAGCCTTAGGAAGCATATTGAGTTGATAAGAATCATTTCTGGCTTACTCCTTAGCAGTGTCTTGCCATCCACATATAAATCATATTTAGCCCATCAAAGAGAAAAATAAAATTATTACAAGTATTTTTCCACTAGTATAGGAAGAATTAAAGGAAGCTGATGAAAGCAGAATAATCTGAAATATAGTTAGTGACACGGCACTCACAACTTTTGATGGAACGTGTTTTCCAAATATTTATTTAGAAATGTTTAGACATAAGCAAATGGTAGCTCTTGCTATCATACGTTACCAGCTCATTGCCAAGTTATATGTCTATCAAAATGTCAGGCGGGAAGGGCCTTACTGAAAACACTTAGTACAGTGCTTACTATATACTAAGTACTAAGTAATAGTGAGTGTCCCAGCAAAGCCTGGTGGTGGGCATAGTGTTAGTGAGCCCATATTGTCTGAGCAAGGCCAGTGGCTCACGAGTTTTGTCTCTGCCATATGCAAAGTATATGCTTTTATGCAAATGACCCAATATCTCTCTGTTAGTTAGCTCTTTCATCTGGATGGTGTGAATTAAAATACTACCTCACTGTGGTTGTTTTTTTTTTTTTTGAGGGTTACATGTATTAATACATGTAAAGTATTTGCAATAGCATCCGCACACAGTAAGTTCTTAGGATGAATAAGCTACTATCAATATTAATATTAATGTTCCTTGGACTTTAAAAGCACATTGTATTTTTAAATGTCCTACTTATTCCAAAGATGCAAATAATTTCAAAGGACCTTAAATTACATTGTTGAAAAGCAGATGGAGTATTCAGGTTTTCAAAATCACTTTTATGTTTCCTGGATTTAATTTTGATCTGTGTCTACTGTAGATGATCTGTGTCTACAGGATGATGGCCGCCATGCTTGGAACTAAACTATAGCCGAGTGTCAGTATTCACCCTCTGCCCTCAGCTGTGAGGTTTGCAAGTTACTTTGACTTAGCAGACAAAAACTGTGGCATAGCCATCGTTGAATGGCTAAAAGTTTTGTTTTCTTTTGAGTTTACATGTAATTGGTTTTATATGTAGCATTTGTAACCGAGATTAATATAACCTTTTCAAAGTCTCTGAGGTGCTCTACGTTGCATCTCAATGAACTACGAGCACACAGAGGTCATGTCTGGTCACTTAAAAAATTAAAGCTGGGCATGACTGATGTTGGATTTTTTTTCTTTTAATTTAAATAAATGACTGCTTTTGGTAGATATGGGAAAGCAAATCTGTCTACCAAAAGGACCCTTATTCTTTCCTTTGTAAGTCTCTAACAATAGATACATGCTTGTGTCTAATTTTATTTATAGTTCATCAAACTGTGATAACTTTTTTTAAGTATTCATGAAACTCTGTATTCTGATTTAAATCTTCCATGCTTAGTTAGATTGAATTAGATGATAATTTAACAGGAATAAGAAAAATAAATATAAAAAGTCATATGAATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048764:ENSMUST00000116553:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.8=84.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types