BtaINT0150376 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004412 | TMPRSS11F
Description
transmembrane protease, serine 11F [Source:HGNC Symbol;Acc:HGNC:29994]
Coordinates
chr6:85473854-85480525:-
Coord C1 exon
chr6:85480371-85480525
Coord A exon
chr6:85474013-85480370
Coord C2 exon
chr6:85473854-85474012
Length
6358 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CAAAAATTTTTTTTCTCTAGGGA
3' ss Score
8.96
Exon sequences
Seq C1 exon
TTTGGGTAATAGGACCAACACAAAATAAACTACGGCAAGCCAGGGTAGAAACCATAAGCACTGAGGTGTGTAACAGAAAGGATGTATATGATGGCATGATAACTTCAGGAATGTTGTGTGCCGGATTCATGGAAGGAAAAGTAGATGCATGTAAG
Seq A exon
GTAAGTCCAAAACACTTCAAAAGAAAAGTTTCCATTAATGATTTCTAATTTGAGCCTATATGTTTACCTGAAAGAAAAAAATGACATGAATTTTATCAAAGAATCAGTTTACCTAAATAACAAATGATAATCAAAATTATTATATTGAGTGTTTATTATGCAAAAACAATGCTAAACACTTTCTATACATTATTTCGTTTAATATAATGAGATGGACATAGTTCAGTTCAGTTCAGTCACTTAGTCATGTCCAACTCTTTACAACCTCATGGACTGCAGCAAGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGCTTGCTCAAACTCATGTCCATTGAGTCGGTGATGCCATCCAACCATCTCATCTTCTCTCGTCCCCTTCTCCTCCTGCCTTCAATCTTTCCCAGTATCTCTTTTCCAGTGAGTCAGTTCTTCGCATCAGGTGGCCAAAGTATTGGAGCTTCAGCTTCAATCAGTCCTTGCAATGAATATTCAGGACTGATTTCCTTTAGGATGGATGGGTTGGACTTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGAATCAATTCTTCAGTGCTCAGCTTTCTTTATAGTCCAACTCTCATAACCATACATGACTACTGGAAAAACCATAGCCTTGACTAGACTGATATTTGCTGGCAAAGCAATGTCTCTGCTTTTTAATATGCAGTCTAGGTTAGTCATAACTTTTCTTCCAAGGAGCAAGTCTTTTAATTTCATGGCTGCAGTCACCATCTTCAGTGATTTTGGAGCCCTCCAAAATAAAGTCTGTCAATGTTTCCACTGTTTCCCCATCTATTTGCCATGAAGTGATGGGACCAGATGCCATGATCTTAGTTTTCTGAATGTTGAGTTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTCTTTAGTTCTTCAATTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGATTATTGATACATACCTTGACAATCTTGATTCCAGCTTGTGCTTCATTCAGCCCAGCGTTTCTCATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACGTACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTACTTCCTGACCTGCATACAGATTTCTCAAGAGGCAGATCAAGTGGTCTGGTATTCCCATCTCTTCAAGAATTTTCCACAGTTTCTTGTCATCCCCACAGTCAAAGGTTTTGGCATAGTCAATAAAGCAGAAGTAGATGTTTTTCTGGAACTCTCGCTTTTTCTATGATCCAGTGGATGTTGACAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCTGGAAGTTCACAGTTCACATATTGTTGAAGCCTGGCTTGGAGAATTTTGAGCATTATGTTACTAGCATGTGACATGAGTGCAATTGTGTGGTAGTTTGAATGTTCTTTGGCATTGCTTTTCTTTGGGATTGGAATGCACACTGACCTTTTCCAGTATTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATCAAGGGCAGCACTTTCACAGCATCATATTTTAGGATTTGAAATATCTCAACTGGCATTCCCATCACCTCCACTAGCTCTGTTCATAGTGATGTTTCCCAAACCCCACTTGACTCTGTATTCCAAGATGTCTGACTCTAGGTGAGTGATCACACCATCGTGGTTATCTGGGTCCTGAAGATCATTTTTGTGCAGTTGTTTTGTGTATTCTTGCCACCTCTTCTTAATATCTTCTGCTTCTGTTAGGTCCATACCATTTCTGTCCTTTATTGTGTCCATCTTTGCATGGCACTATTGACGTAGTACCATGACATAGTACTATTTACAAAATAGAAAATTAGTCTATTGCTCCCGTTTCTGGTTCAGACCACCTCTTATGCTCTATTGTTATTTTCTTAAGCAAATTTGTAATCAAAAGGCAGAGAAACCTCTCCTCTGAAAAGCACTTTATTCAGCTGTATCATCATCTCTCATCTATCTTGTTTTTATCCCCTTACCTCCTAATATCTCTACTTTGTTCCACTCATTCTTTCATGCCATTGACACCTAGAATAGATTCCACCTTTGTCCTAACTTCTGCAATATTGTCATCAACTCATTTAAATGCTGGATCCTTAGTTCATAGATCTCAACCTCCAGGGACCTTCACTCCTCCTCAGTCACCTATTCCTAGGGCCACACCTTGAACCTTGTCATCAAAAACTGTTCCATCTCCAATGACACTAAATTTCCAAATCTTCCTGTTTAACAACTATCCTCAGTCCTTTCTGCCTGATTTTCAGCTACTTCTGTTTCTTTGGTCACACTGTTATAATCCAACCTACCAATCCTCACTGCCCAACATACACAACTTACACACATATTCTTTGTGTCCCTTCTCTGTTTTATTTTCATTTCTAGCTCTTACACCATTCAATGCACAATATATTTTATTTAACTGTCTCACTAGCCTAAAAAGTGAACTCTGTGAAGGCACTCATTTTAGAGCATTTATTTTATTTACCTCTGTTTTATGAATACCTCAACCAGTCTTGGCACAAATATTTGTTGGCTGAATACCACCCTTCTTCAATTTCACAGAGTCTTGTAGAGCACAGCTTCTCTGCTGTTTCAAGTCCATTAATTCTTTCCTTTCTTCCACTGTTCACTTGTCCAATTTAGATTTCACTGTGATCATTTTTTAAACATTTTTGCTTATACCCCAAACCCACTTGATGTTCTCTCTTCCTAGTGTTTATGTCTGACAAGTTCCAAACCTGGAAGAACTCAGTTATTCAGACTCTCTGCCTGCATCTGGGAAGTCATAGGCTCCTGAAAAAAATACAACAGAACACATGGCTCCAGTATGTGTTCCACATAACAAAGCTGACAACCTTACTATTTTTGTTGCTTTTTCCTAAATCTACCTTTCTCTGAATTCTCCCACCATTCTACACTTTCCTTAACTTCCAGTTTTTCCTGCCCATTTATTCTCAACTGATGATTCTGTTCTGAATTTTCAAAAAAAAAATAAAGTCATGGTAAGGAATTTCCCCATCTTCCTAGCATCAAACATTGCAGATCTGTCTTTATCTGGACCCTTTTCATCCACCTTCAGCTTAGGTCACTACAGAGAAGTTGCCCCTTCACTAAGGATAGCCCCTTCCCCACTGTTCAGATTCCTCTTCTTGTTGACCTTTTGGGGAAGTTTACACTAGCAATTGGGCTTCCCAGGTGGCACCAGTGGTAAAGAACCCACCTGCCAATGCAGGAGACGTAAGAGACGAGGGTTTGATCCTCAGGAAGACTCCCTGGAGAAGGAAATGACAACCCAGTCCAGTATTCTTACCTGGAGAATTCCATGGACAGAGGAGCCTAGCGGGCTACAGTCCGTAGGGTCACAAACAGCTGGACACAATTGAAGTGACTTAGCATGCATATATTAGCAATTACAGTCTCTCTCCTTCCAGAGTCAACATTTCTCTTGTGACTAAATTCTCTATTCAGATCTCTCAAGTCGTGGAAAAAAAAAAAAAAAAGCCTTCAGCTGGCATCTCATTTTATCTCTTTACCATCAAATATTTGAGAAAATGTTTATTGTCACAATTTTCTCATCTCTCACTAACTCTTCAAACTGTTTCAATATGGTTCCTGCCCTATTGCTTCATCAAAATCTCTCTTCCTAATGTTTTCAGTGAATCAATAACGACCATCAACAATTTGAGGGGGTCTTTTTTTCCTCTTACCAGTATTTAATAGTGCTTACCACTCCCTCTTTATTGAAATACTGTCTTCTCTTGGCTTGTAATAATTTTCACTTTGCATCTCTGTCTGCTCATTCTCTATCTCCTTTTCAGTGTCCTTCTCTTAATCCAACCCATTACATGTTAATTTATGCCTGTTTATCTTTTCACTTGATACTTTCTCCCCAGAGAATCTAATTCTCTTTCATAGCTTCAATTATCTTTTTTTTTTTTTTTTTTTTTGCAGATACTACATAAAATTTTACTTTTAGCCCCATCCTCTCCTTTGATCTCCAGATTTATCTATTCTATTCCTACTTGGCAGCTCCAGTTGGATATTTCAAAGGCACTTCAAATTCAAATGTTGTACCCAATTCTGCTCTGATTCTTCTCCCCAACTAATCTTCTTTCTGTGTTTTGTATTTCTGTAAATGGCATTCCCTTTCATTCCATTAGGTATGCCAAAGGCTAGAAACCATTGTAACTTCTCTTTATCCCATATTCAAATAACCACCTAATCCCATGGATTTTACTTCCTTAAATCTCTCTCCACCATCTTTTGTCTTTCTATCCTCTCTCAACCTCTCCTCCCCTTCCTGTCCCTTGACCACCTCCCATACACATTAACTATCTAGTTTATCTCTTTGTTTTCATTCTTATGATCCTGTAGTGCATTAGTCAAATAAATTTCAGGATGGTTTCTAACAGGATGCAATCTGATCATGTTAACACCCTCCTTAAAACACTATGGCAAAACCAATACAATATTGTAAAGTAATTAACCTCCAATTAAAATAAATAAATTTAAATTAAAAAATAAAATAAAAAAATATAGATCTAAAAAAAAGAAAAAACACACTTAAATCTTCAGTGCTTTACCTTTATTTTTATCTTCTGGTAAAATCTTCTTAAAAAGACCCACAGGACTTTATATAGAATAGTCTCTCCTTACCGCTATGGCCTCATTATGTACCACTTGCCCACTTGCTGTCCTCTCTCCAGTCTCCTATTTCTACAAGCCTTTGCATATGCCATGTTGCTTCATGCCACAGAGCATTTGTCATGCTTCCCTCTGTCTAAAACGCATTTCATTCATGTCTTGCTTTTCATGATTCACTCTCTTCCTTCAGCTATTTGATTGATTACATTTGACCAAGGGAAATATCCCTAACCTCCCTGACTAGTCAAATCCCCCTATTGTATGTCTCTATAGCACTCATAACAGTTGTCATTTGCATATTTGTAGGCTTATTTCATATTATTTTTTTCTTATCCTAAATGTCAAGCTCTATGAGCATAGGGGCAGTTCATTTTTGGTCATTGTTAATCCTCAATGCCCATCAAAATGCCTGAGATGCATAGCAAAGTGTTAGGTCACTCAATTGTGTCCAACTCTTTGCAACCCCATGGACAGCAGCCCCCCAGGCTCCTCTGTCCATGGAGTTCTCCAGGCAAGAATACTGGAGTGGATAGCCACTTCCTTCTCCAGGGGATACTCCCGACCCAGGCGTCCTCAATACCCAGGGGTCTCCTGCATTGCAGGCAGATTCTTTACCATCTGAGTCACCAGGGCAGCCCTGTGACACCTAGTAGGAACTCAATAAATAGTTGATAAAAGAAAAAACAAATGAAACAAGTGGGAGAGGCATAGAAAATTTATCCTGTGTATCTTACCTGAGATCACACAACAAGTAATTAATAGAGCTGGACCTGAAACTTGGGCAGTTCAACTACTGAGACCACAATCTTAACCTTGATACTTGCATCTATTTATTTGCATAATCTTCTTTGATCCAAAAGAGATTTAAGAAGACTTATATAAAATTCAGAAAGCAAACATAGATAGAAATAGGTAAATGAAAGAAAAGAAAGCCAGAGTAGGTTCATAAAATACAGTCAAGAGCTAACATACTCAGAAGAGATCACAGAAAATTTCTGCTGCTGCTGCTGCTAAGCTGCTTCAGTTGTGTCTGACTCTGTGGGACCCCATAGATGGCAGCCCACCAGGCTCCTCTGTCCCTGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAGTGCATGCATGCATGCTAAGCCGCTTCAGTCATGTCGGACTCTGTGCGACGCTATGGACAGCAGTCCACCAGACTCCACTGTCCACAGGATTCTCTAGGCAGTAATACTGGAGTGGGTTGCCATTTCCTTCAATGTACAAATACCAACCTCATATTAAATATTTTAGATAAATGCTTACTAAATCAAGCTTAAAGTGTCTAATAAAACTAGCAAAAAATATATGTATGCTGAAGCATAAATAATGTAGCCATTCCATATAAATTAGTATTGGTCTTTCTAGAAAATAATTTACTTAATAATTTAGCACAAAATTTTAACTCAGTCAAGAGAACCATCATATAATCTGTCTCTAATCTGGTTGTATGTTCTATGTAACTTTTTCCATTTTTCCTCTGGAAGAGATGATTGCAGTGATTGTCCTACTGAATTAAATTAGAGTTAACAATCTCAAAAATTTTTTTTCTCTAG
Seq C2 exon
GGAGATTCTGGTGGACCTCTGGTTTATGATAATCATGAAATCTGGTACCTAGTTGGTATAGTAAGTTGGGGACAATCTTGTGCTCTTCCCAAAAAACCTGGCGTCTACACAAGAGTGTCTCAGTATCGAAACTGGATTGCCTCCAAGACTGGTATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004412:ENSBTAT00000005785:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.5=84.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]