RnoINT0153314 @ rn6
Intron Retention
Gene
ENSRNOG00000002005 | Tmprss11f
Description
transmembrane serine protease 11F [Source:RGD Symbol;Acc:1560675]
Coordinates
chr14:23981219-23986963:-
Coord C1 exon
chr14:23986821-23986963
Coord A exon
chr14:23983801-23986820
Coord C2 exon
chr14:23981219-23983800
Length
3020 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GTTTTTTTTTTCTATTCCAGGGT
3' ss Score
11.34
Exon sequences
Seq C1 exon
GGCCAACACAAAATAAACTCCGGCAGGCCAGGGTGGAGACCATAGGCTCTGATGTGTGCAACCAAAAGGATGTGTATGACGGCTTGATAACTCCAGGGATGCTGTGCGCTGGATTCATGGAAGGAAAAGTAGATGCTTGTAAG
Seq A exon
GTAAGTTGGAAGTCAAACCTTTGAAAGGAAGTTTCCATTAGATAATTCTGTGCTAATGGGGCAACTGTATTGAGTATTTGATGAGCATTAACCTAAAGTAAAGTACCTTTAGTGTGTAGCATTTCATTCAGTGCAGTAGATACGTGCAATGCTATCATTTCCCCATCCTCCATATTATGAAATAAAAGTCGGAGGTCCCCACTTTTGGTCCACACAGTTATTTTATGCTTCATTATTTTTCCTTGTCTCTTTTTTTTTCTGTGGGGGAAGGGAGTGAGCGATTGAGAGAGAATCTCCTATAGTAGTCTAGGTCAATCTCAAACTTGCCTTGTAGCTGAGGATGGTCTTGAACTCTTGACCTTCTTTTCTATACAACCCAAGTGCTAGGGTTATAAGACCATACAATCATAGCTGACTTCCATTCTCTTCTTAAAGTCAAGCCTCAAAGATAGAGAACTGCTCCTCTGAATGATGCATTTTTCTTAGAATTCCTTTACCCAGAACTAGAAGGCAGGTTTATTTTGCCAGGCATTGGGAGTTTTTTTAGTGTCTGGTGCTTGAGGGAACATTTTCACTCTGTATAATGAAGTCCTCTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTATGCAGTGTGTGTGTGTGTGTTTGTGTGTATGCATGTGTGTGTATGTGTGTGTGTGTGTGTGGNTGTGCATACGTGTGTATGTGTGTGTCCNTGTCTATGTGTTTNNNTGTGNNTATGTGTGTGCATGCATACGTGTGTATGTGTGTGTGCATGCATGTGTGTTATGTGGTCAGTTAGCANNCTTATAAAATAATATATTATAAAATAATGAATTTTCTGGAACTTTTCAAATGTCTTCAAGTTTATTTATCCCTCCTTCCTGTCTCTCCATCTGCATTATTCCTCCCAACTCTACAATTAGGTACCCCTCCCTCCTCATTTCAACATTTACTCCTTCATAACACCCATGTCCTATCAGATTCTTCAGACCTACATTCCCTACCCTCCATGATCCATTTGTATTTTCCTGGCTTCTGTGATCACCCAAGGTTATATCCTCAAATCTAAAGAGTCCTAGCTAAAGTCCACAAGTAAGGCAGAACATGTGGCATTTGACTTTCTGAGTTCCAGGTTATTTCACTCAGTACATTTTCCATCTATTTATCAGCAATACACATAATTTGTGTTACTTTACTGCTGAATAGGATTCTGTTACAGCACATTTTTATTCCTCATTAATCAGTAGAAGGACATCCAGTCTGCCTCTGTTTTCTAGGGATCGTGAATAGATTGCCGAAAAGAACAACTCCTTTTCTTGTTGTTTATCTAGTATATATTTTATATATTTCTGCTTTGTATTTTATTTCCTTCTGTTTACTAAACTTGACCTTGGTTTGCTCAGTTTTCTCTTTTCAAGTAATAATATTGTATTTAATTAACATCTTTGCTCTTTTCTGACCTAGCTATGCAATGCTCTAAATTTCCCAATGCATCTATTTTTCATGTATTTTCTGTTTGTCTCAGAATATTTTATTAATTTCATTTTTTTCCATTTCTGTGACCTTGTAAAGATTTTGTCCATTTGTTGACTTGTAGTTACAAGCCACTCTGGTTCAAGGGAGCCCTCTGTAAATCATTTCTTTTCTATGGTTCACCCCTCCTTCTCCGCTCGAGTTCCTGTTTTCACTGACCCATCTCTTATAGTTAAAATTTACCTTACAACTGGTTTTGTCTTATTATTAGATGTCTTGAGGGAAAATATTTTCACCCAGATGCCTCCAGCTAGAACTCTACTTCGAGGCTTTGCTATGTGATATTTGGAAAGAACATCTGTGCCTCTTGTCTCTATTCCTTACCTCCTTTTAGGACTTTCAACCAGCAATATTGGGGTTTCCCTATTATTTTCTCCAAACAGTTCTTCCTAATGACTCATGAGTGACATCAATGTTAAATCCTAATAGTCATCTTTGACACATTTCTTTTAAAAAAAAAGCTTAGTAACAGCGTTTAATAATGTTTACTGCTGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAGGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAATAATAATGTTTACTGCTCCCCTTCTTAAAACCTTATCTTCTCCTGATTCTGAATTATTTCCATCCCATTTTTTCTTCATACCCCATGTCAATGCTAATTGAATCTGATGGCTTTTTTTTTTAACCTTTTGTGATAAATTCTCTCTAGCCAGTTCTATACTGCACCTCCACTCTCTCTTTCCTCTCTCCACATGTCTCCCCTCGTCACTAGCCACCTCTTTTCTACTTTAGTACTCCTTTGGCGCATTTGTAAGATAAATTCAGCAATATTTACAGGACCCTGTTCTAGTTTGACAAATGCATTGTTAGAATATTTCAGTGATCACCTTTTGTTCTTAGAAATATGAAGCAAAGCTTTCTAAACAAGGCACATGGTGTTCATAGTGTTTCCAGTAACTCCTGGCCAACCGCAGCACATGCCACTGGCCTCCTCCACTGCTGTTTTCTTTCTCCAATAAACATCCTTTTCACCCTTGTATAGGATAGATTCCTACATATCAAAGAGAATTTGCAAAAAAAGTCCCTCTGTCCACAGTGCCTTGCATTACTACTTTCTGATGCCTAATCAAGACCTTTGCTTTCTTTTTTCCCCATCTTTATTAAATTGGATATTTCTTATTTACATTTCAAATATCATTCCCTTTGCCAGTTTCCAGGCCAACATTCCCCTAACCCCTCTCTCTCCCCTTCTATGTGGGTGTTCCTCTCCCCATCCTCCCCCCATTACTGCCCTCCCCCAACTACATTTCCCAAAGATATACTGGGAAAAATCCACCCTGAACAATCAAATATTCATATTGTATGTTTCTCTGCCAGTTACTGTAGTTATTATTTGTCTGTGGGAAAGAGACGATAACTATGATATTTATTGAGTTTTTTTTTTCTATTCCAG
Seq C2 exon
GGTGATTCTGGTGGACCTTTGGTCTATGACAATCGGGACATCTGGTACATTGTAGGCATAGTAAGTTGGGGGCAATCTTGTGCTCTTCCAAATAAGCCTGGAGTCTACACAAGGGTGTCTAAGTATCGAGACTGGATAGCCTCCAAGACTGGCCTCTAAAGTAGACTGTTGTGAGTGATAGCCACAGACCACAGAGCAGGATACCTGAAGATTGTACAGTATCACGTAGAGTTGTGAGTTATAGCCACAGCCCATGGAGCAGAATGCCTACAGATTGTACATCATGTGCATTATTACTAAGAGTCATCGGGATTGAATGAGTGCTTTTGCCAGATGTCAAGGAACTCTTCAGACCGAGACCAACGTAAGGTCATGAGGTGGCTTTTTGTGTATAAACTTTTACCAAGAAGGAAGAAAATCTGGCAAATAACAGGCAGCACCAGTACCTCACTCACCAAAGTGCCTCGTTAATGTGACAAACACAAACAGCTTCCCTCAGGATATCAAGAGCTGCCAGGTGGCTACGATCTCACCTCATATGATACATAGAGCTCCAGGACTCATCTCATAAACATCAGCTAGCATCTTCCTTAAGGATTCAAGACACAAGCATTTTGGAACTCGTGACTGGACATTTGACTGCTGCAATGAAGGAGTGTGGAACCTGAGGTAAAACTTGAACTCTAAGCTGGGTTTGCAGCTGACCGAGCAGGACGTTTTTCTCAACCACAGGAACTGTCATTATCTAGATGCATTGGAACTTGCCGTTACACTGTATAATGCCCTCAAGCAGTAGCTTTAGAGAGCAGATTACATTGTTAAGAAGCATTTCTGACTGTCTCTTGCCATCCACATATCAATCATATTTCGTCCAGCAAAGAGAAAAAATAGAATCATTCTAAGTATTTCCCCACTAGTATAGGAAGGATAAAAGGAAGCTGATGAAGGCAGAATTATCTGAAAAATGATTAGCATCAGGGAACTCTAAACTTTTGATGGAAGGTGTTCTCCAAATATTTATTTAGAAGTATAGGCATAAGCAAGTGGCAGCTGATGCTTTTGTAAATCACCAGCTCATTACCAAGTTCTATGTCTATCAGAATGTCAGGTGGGGCATGCCTCAAGTAAAACACTTAGTACAGTGCTCACTATGCACTAAATACAAAGTCCTAGTAAGTGAGGGTCCCAGCAAACGAGCTTCACTATAGTTCAAAGCCTGGTGGTTGGCACAGTGTTAGCGAGCACAGATTGTCTGAGCTAGGCCAGTGGCTCATGTACTTTGTCTCTGCCCTATGCAAAGTATATGTATGATTTTATGCAAATGACCCAATAGCTCTGTTAATTAGCACTTTCATCTGGATGGTGTGAATAAAAAGACTACCTCACTGTGGGTTTTTTTTTCTTTTGAGGATTACATGTATTAATACATGTAAAGTATTTGCAACAGCATCCGAACACAGTAAGTTCTCAGGATGAATAAGCTACTATCAATATTAATGTTCCTTGGACTTTTAAAAGCACATTGTACTTTTAAATGTCCCGGCTTCTTTGAAAGATGCGAATAATTTCAAAGTCCCTTAAATTACATTGTTGTAAAACAGATGCAGTTTCAAAATCAGCGTTTCCTGGACTTAATTTCGATCTGTGTCTACTGTAGCCAGTACTCGTGGGATGCTGGTCGTCAGGCTTGCAACTAGAGCCATGCATCAGTACTCACTCCTAGCCCTCAACAGTGAGGCTTGCATGGGTTACTCTGACTTAGCAGACAAAATGTGTGGCATAGCCATCCTTGAATGGCTAAAAGTTTGGTTTCCTTTTCAGTTTACATGTAATTGATTTTATATGTAACTTTTGTAACCAAGATTAATATAACTTTTGAAGTCTGTGAGTTGCACCTCAATGAGCTACAAGCACACAGAGGTCATGTATGGCCACTTAAAAACTTAAAGATGGCCATGACTGATGTTGGATTTTTTTCCTTTAGTTTAAATAAACTCCTACTTTTGGTAGATATGGGAAAGCAAATCTCTCTACCAAAAAGGCCTTATTCTTTCCTTTGTAATTTTGTTACAACGGATACATGCCTGTGTGTAACTTTATTTATATTTTGTCAGACTGTGATAACTTTTTTTAAGTACTCGTGAACCTACGTATACTGATTTAAATATTTCCATGCTTAGTTAGATTGACTTAGATGATAATTTAACACAAATCAGAGAAATAAATATAAAAAGTCATATGAATTCTAAAAACAATAGAAAAGTGTATTTTTTATAACACTGTGTGTATGTTTTATCTGATGTTTGGTATTTGACTTATTGATTGAACATCATAAAGGTCAATTTATCTTCTACTTCATGTTTCCCATCTGACATATGGGTTACTAAGCTGTCTACCTCATGGTATTTCTGTGAGGGATTCTTACAAATAATAAAATTGAAAAGTTGGAGAACATTTAAAAATCTCAAAACGCAGAGTATATTACTGTAAATAGACACGAATACAGATGATACAGGAAATGGATTTAGATTATGAAGATCGATGTGTTTTGCTCTTTACAATGTTGGAATTTTTTTTTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002005:ENSRNOT00000002745:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.8=84.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]