BtaINT0007510 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N633]
Coordinates
chr6:85615946-85617345:-
Coord C1 exon
chr6:85617171-85617345
Coord A exon
chr6:85616206-85617170
Coord C2 exon
chr6:85615946-85616205
Length
965 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ATGATTTTTATTTCTTTCAGTTC
3' ss Score
9.25
Exon sequences
Seq C1 exon
GCTGTGGGAGACGACCAAGGATGTCAGCTACATATGATAGAATCAGGGGTGGATCCACTGCTCAGGAAGGAGAGTGGCCCTGGCAAGCAAGTCTCAAAAAGAATGGCCAGCACTACTGTGGAGCATCTTTGATCAGTGACAGATACCTGTTGACTGCAGCTCACTGCTTTAAAAA
Seq A exon
GTAAGTTCATCATATTGCCTGGGGCTAGGGCTTCCCTGGTGGCTCAGTTAGACTGCCTGCAATGCAGGAGACCTGGGTTCGATCCCTGGGTCAGGAAGATCCCCTGGAGAAGGGAACAGCTACCCACTCCAGTACTTTTGCCTGGAGAATTCCATGGACAGAGGAAACTGGTGGGCTACAGTCCATGGGGTTGCAAAGAATCGGACACAACTGAGCGACTAACACTTTCTTTCAGGGAGGCTAAAGTTCCAGTTTACACCTGTTATCCCAGTGTAATCATCAATAGGATTCCTTCTCGTTCTCAAGTGTTCTTGTTTGAAACACAAATCATATGATAAGCCAATCTAAGGCTTTCCTACCTTATTAGTAAGATTGGAAAAAGTCATTCATTCTTGACATTTTATTTCTCACATGTTTCTTATCTCTCATCACTTCATACTCAAGATATCCCAAATGACTTGCAATTGTTATCACACAAAATCCTGTTTCATACCTCCTTCCCACTCTGCACCTGCCTATCTCCTTCTCACTCTGCACCTGCCTATTTCCTTCTCTCCTTGTCTTTTAGGCAAGTATGACTCAGCTCTATAGTCTCATCAAAATGCTACTTTTCCTAAGAAATCTTCCAGTCCCAAGAGCATGCAGATTTAAGTCCTCCTATTTTGTGGTCACACAACCATTTAGGGAATTAAAACTTTTTGTGTTCATGCCCATCTTTCATTAGATTTAAATTTCTTGAAGGCATGAACTATTTAATTTCTACATCTTAATCATCTTACATAGTATAGGTATAAGGACTCAAAGAAGATTTTTCAAGTGAATTTTAAAAAATCAGATTGTACCACTGCTAATGGATTGCAAAGCAAGAAATTGTCATTAATGTCATGAAAAGACTATAACTGATGCAGCCTGTACCTCTATTTCTCTGAAATAAAAGCAAACTACATGATTTTTATTTCTTTCAG
Seq C2 exon
TTCACAAGATCCAAGGAACTATACTGTCACCTTTGGTACCAGAGTAAATCTCCCCTATATGCAACACTATGTTCAGCAAATTTTTATTCATGAAAACTACATCAGGGGTGAACTTCATGATGACATTGCAGTTATATTGCTTACTGAAAAAGTTTTATTTAAGAACGATGTCCATTCAGTTTGTCTTCCTGAAGCCACACAGATTTTTCCACCAGGTGAAGGAGTTGTTGTCACAGGATGGGGAGCACTTTCATATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038520:ENSBTAT00000054325:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=74.6)
A:
NA
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTGCTCAGGAAGGAGAG
R:
ACAACTCCTTCACCTGGTGGA
Band lengths:
350-1315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]