MmuINT0162619 @ mm9
Intron Retention
Gene
ENSMUSG00000035861 | Tmprss11bnl
Description
transmembrane protease, serine 11b N terminal like [Source:MGI Symbol;Acc:MGI:2442893]
Coordinates
chr5:87091199-87092587:-
Coord C1 exon
chr5:87092413-87092587
Coord A exon
chr5:87091459-87092412
Coord C2 exon
chr5:87091199-87091458
Length
954 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TGGGTTTTTTGTTCCCTCAGGAC
3' ss Score
10.14
Exon sequences
Seq C1 exon
GCTGTGGGAGAAGACCAAGAATGTCTGCAACCTACGACAGAATCACGGGAGGTTCCACTGCTCACAAAGGAGAGTGGCCATGGCAAGCGAGTCTCAGAGTGAATGGTAAACACTACTGTGGGGCATCTCTGATTGGCGAAAGATTTCTGCTCACAGCAGCTCATTGCTTTCAAGG
Seq A exon
GTAAGATCGTCATGTTCTTTAAGGTCAGGGGATCCCGAGGAGCTGGCGAATTGTCTTCCATCCTCACAAGTCCTGGTTTGAAAAGCAAACTACTGATAAGCCTATCTCAACCTTTTCTACTTCACCGCTTAAAAATAGGAAGAGCCATTAGTTTTTTTTTTAATTGATTTTTATGCCATTCATTTTTGATATACTTTTTTTTTCTTGCATGAGTCTTATTTCCTCATCGCTGTATACTTCAGACTCTAAACCACCTGCAGTTGTTCAAATTCTACATTGAATCTCTTCTCTTCCTCCATCCTATCCCACACCTATGCAACATCTAAGCGAATATGACTCAGTCTAAAATGCTGTTTGCTCTAAAAGTAGTAGAAATTTCCTTTTTCTTAAGCATGGAGGTTCATGTCCCCCTATTTATTTGTCTCATTAAATATATGGGCAGACATAAAGAATTTATAATTACCTGTCTGTATACACAACTTGCATTAAATTTCAGCTTTTAAAAGGCATATACTATATCAGTCTATCTAGTGTACACTGAAGAGACTCAAACAAGATGTTTTAAAAATGAATTTAAAAATCGAATTATATGGGGTTGGAGAAATGGATCAGCAGTTAAGATTACTTGAGGAGGAACTGGGTTTGGTTCCTAGCACCCATATGGCCACACCCAGTTGTCTGCAACTTCAGTCACAGGGGATACAAAGCCATCTCACCTTCATGTTCAATATATACATGTGGTGCATAGACATACATACATGCGAGCAGAACACTTATACATACAAAATAAGTCAGAAAAAAAATGAAAAATCAGATACTGTTGCAATGGGCTATAATGCAAGAAAATATTGATGTCGTAAAAGCTTGTGATAGATGCTGCTATGTACTATAAAATGTAGTATTTCTGTCACCTAAAAATAAGTATAAAAATATGTGGGTTTTTTGTTCCCTCAG
Seq C2 exon
GACAAATAATCCAAAAAACTTAACTGTCAGCTTTGGCACTAGAGTAACTCCAGCCTACATGCAGCATTCTGTTCAAGAGATTATTATTCATGAAGATTATGTGAAGGGGGAACATCATGATGACGTTGCAGTTATAAAGCTCACTGAAAAAGTTTCATTCAATAATGATGTGCATCGGGTTTGTCTTCCGGAATCCACCCAGATTTTTCCACCAGGTGAAGGAGTCGTTGTTACAGGATGGGGATCATTTTCTTACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035861-Tmprss11bnl:NM_177024:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=74.6)
A:
NA
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCACAAAGGAGAGTGGC
R:
CAACGACTCCTTCACCTGGTG
Band lengths:
348-1302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: