BtaINT0007516 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N633]
Coordinates
chr6:85679487-85685553:-
Coord C1 exon
chr6:85685411-85685553
Coord A exon
chr6:85679641-85685410
Coord C2 exon
chr6:85679487-85679640
Length
5770 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ATCTCTCCCTTCTCCTTTAGGGC
3' ss Score
12.54
Exon sequences
Seq C1 exon
GTAGCAGTCAAAATCATCTTCGGCAAGTACAGGTAGATCTCATAGATGCTAAAATCTGCAATGCACCTCAAGCTTATAATAATGCCATAACTCCTACAATGTTATGTGCTGGCTCCTTGAAAGGAAATAAAGATGCGTGCCAG
Seq A exon
GTAAGTGATTGAGTGCATAATTTTTTGTTCACCTTTTATTTTGAAATAATTACAGTTCTACAAGAAGTTGCAAAGACAGTACAGAGGGGTCCCCTATAACCTTCACCAAGTATTCTCCAGTGGTTACATCTCATATAACTAGAGTAGAATATAAAAGCTAGGAACTGATCTTGGTACAGGTGTACTTCTTGCTTTTTATCACATGTGCAGATTTGTGTCGTCATCACTGCAGTTAAGAACTCTTCCATCACGACGGAGATCTTTCTTCCTTTATAAAAACATCCATTTCCTTCCCCCATCACTTTATCATCACTAACATCTGGCAATCACCAATCTGTTTGCCATCTCTATAATTTTGTAATTTCAAGAATGTTGTATGAGTAGAATCATACAGTAGCCTTTTTTCAGAATTCCATTTTGATTTTTTTTATAGACCAGCCATTTTTTTTTTTTTTAAGTGTAGATCTGCTAGTGTCAAATTCCCTTAGATTTTCTTGGTTTGCAAAATTTTTATTTCCTATTTATTTGTAAAGCATAATTTTGCCAGGCATATAATTTATGCTTGACAGTTTGTTTGTTTGTGTGTTTGTTTTTAGTGTTTAAATCATGGCCTCTGTAATTTAGGATAAGAACTTGCTGTTATTAGAATTGCTTTTCTCTTGCAGATGAAGTGTCATTTTTTTCTTGCTGTGTTCAAGGTTTTTTCTTTGTCTTTAGTTTTCAAAAGTTTGAGTTTGTATCTTGGCATGGATTTCTCTTGGTTATACTGCTTAGGGCTTGCTCAGCTTTTTAATCTGCAGGTTTATGCCATTTGACAAACTTGGGAAAGTTTCAGCCTTTATTTCTTTGAAAAATTTTCAGCTTCATTTTGGAATCCAGTAATAGGTATGTTAGCGCTTTCATTATGCTCTCAGAGATCTCTGAGCTTCTGTTCATTTTCTTTCCACTCTTTCTGTGTGTTCAGATTGAGCAATTTCTATCATTCTATCTTCAATTTCATTGATTTTGTTTTTACTTCCATCATCTCCTTCATTTTTCTGTTAAGCATGTCTAGTGAGCTTTTTATTGGATTTTTTGTTTGTTTCATGATGGAAACTGCCCATTAAGACATTTTTGTGACGACTGCTTTAAAATCTTTGTCAGATAATTCCAATATCTGTCATCTCAGTGTCAGTGTCTGATTGACTGCCTTTTCTTATTCGAGTCAAAATTTCCCTGGTTCTTGGTATTGGGTGATTTTCAGAAATATCCTGGACATTTTGAATATTATGTTATGAGTTTCGGCATCTCCTTTAAATCTTCTGTTTTTACAGGACTCCTCTGACATGACAGTGGAGTGTGTAGGGGAATGAGGTAGCACTTCTCCCACTCATTGTCCCCTGACACCAAGGTGGGGAAAGAGACCTTTGTTAATGCTGGATGGAGGTGGAATTGCAGGCTTCTCACTAGGGTTTCCTTTGTGGCTCAGCTGGTAAAGAATCCACCTTCAATGCTGGAGACCTGGGTTTGATCCCTGGGTTGGGAAGATCCCCTGGAGAAGAAAAAGCTACCCACTCCAGTGTTCTGGCCCGGAGAATTCCATGGACTGTATAGTCCATGGAGTCACAAATAAGACACGACTGAGCCACTTTCACTTTCACTAAGTGTGTTTTTTTTTTTTCTTTTAAGATGGGAGAAAATTATTAAATTTATTTTATTTTTTTGGCCGTGCAGTGCCTGGCATACAGGATCTTAGTTCCCTGACAAGTGATCCAACCCGCCCTCCCTGCACTGGACTGCCAGAAAAGTCCTGAAACTTATTAAATCTAATTTTTTAAAAAATATGTACCATTTTCCCTCCTCACCCTTCTTGGTGGAGGAAAAGAAAATCCCCTCACACCCTCCATTTAGGGGATTTCACATATAAAGTCTGGGATGGTGAGGATGAAGTAAAAAAATACGACTCTGGATGGGGGCAACTTGTTACTGCTCCCCTTGTGGTCTCCACTGACATCATGGGATAGTGGCCTTATCACTGCTTGGCTCTCCACTAGGTCTGTTCTGACATCACCCTAGAAGGAGAGAGAGCTCTGCCTCATCGGTACTGGGGGGTAGTTCATGCTCGCAGCTGGTTACCACAGGGGAGGAAGAGGAAGGCTTCATCATCACCTGGCAGGGATGACAGAGAGGCTGCCCACTCAGCCTCCTCTGACACCAGTCAGGTGGGAACTGGACTTCTTCAGATTCTGTAAGGGTGGAAGTCCAGTCTCCCCACTTGGGCCTTGCTGATGCAGTTGGGACGGGACCACACTTTTTTCTGTGATTGACTCACAGTGTGTACACATCACCCAGCTTATACATTATCAGCTCATGACCAACCTTATTTCATTCCTACATATTTTAACCCCCAACCTTCTTCTTCCCATCCTCAACTCCAGATCTATTTTGAAGTAAATCACAGTTGTTTATAATTTCATTTGAAAATATGTTACCTCTTCTGTTAATACAATGCCTTTTTGATGATAGTATTACATACAAATGTCTCATAAATTTGGGGAACTAAAGAGGAGAAACCAAGTTTGGCCTTGTGATTATAACACACTGCTTTTCTGTTTTAGGAAGAATCTGATACTTCCCCCTCTCAAAAATCATCAATAACTTTATATGCAGAAATCTTACTGCATATATATATATATATATATATATATATATATATATGTATCTTACTGGCTCTCTTACTCCCTCCCATCTCAATGGCATGTGGCTACCTCCTCTTAAAATATGATCTTGTTTGGGGTTCTATAATCCTGAAATATGCTGATTTCCCCCTCCCTCCTTTTCCAACAACTCATTTCTGGTTCCTTATTTTGGTGTCTCTTTATTTCCCTCTCTGCCTGTCTCTAAGCTTGGCTGTTCCTTAAGACTCATCTTTTTTTTCTCTACATATACCTTCAAAGAAATTACCTTTTCTTTAAGTTAGCTGTCACTTTAATGTCTTCCAAATATACATCTCCAAAATTAATCTCTTGCTCAAATTCAGTCTCTCATTTCCACATACTCCCAAACCATTTCCATTTATATGTTTTAAGTTGTTAGTATACGACTAACAGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCGCTGAAGGTCGGACATGACTGAGCGACTTCCCTTTCACTTTTCACTTTCATGCTTTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTTGGACACGACTGAAGTGACTTAGCAGTAGCACACGACTAACTTTTATATATGTTCCATCTTAAACGCAACAGGCATTCAGTCAGTTCAGTCGCTCAGTCATGTCTGACTCTTTGCGACCCCATGGACTGCAGCATGCCAGGCTTCCCTGTCCATGAAATGTTTTTTTTTCAAGTTTCTCATTTATGTGGTTGGCTTTCATTATTCTTGAAAACTTTTAGTTTTAAATCTCTTTCATAGTAATCAATTAAATCATAGAATATTTTCCCCCTTACTATTTCTTCCATATTTATCTCTTTGTCTCCTTTCTGTTAAGAACTTAATCTATTGCTTCATTGCTTCATGTCTTAATCACTAAAACTTGTTTCTGGTTTAGCTTCTGGCTTTAAGTTTCTGTTGTGATATGTACATTCTTTTGTAAAAAAATTTAGTGGAGTAGTTGATTTACAATGTTGTGCTAGTTTCTGCTATACATCAAAGTGAATCAGCTATACATACCCATATTCTTGAAGAAACTTCCTGTTCTGTTTGTCATTAAACCACTCACTAAAAATAACTGCATTTAAGGGAAAAACAGCAGTAGATACAGACCAACGGATCCCTCAAAAGTTATGCAACTTTGTAACCAGAGAATTAACAACATCATCAACAGCAAAAATAATTGTATCTTGAAAAATAACTTAGTGTAGGTAGGCAGATTGCCCAGGGTGGCTGGCGGCTGACTGAGGGAAAGTTAAAAATGCACAAAAACAATAGAGGGTGAGACAATGCACATGGGAGTGTAGCTCTGGGCAGAGGAGGAAGTACAACCTGGCAGGACCTGAGAATTAAGCAAGGATGGGGTGTGCCTCTCTGGGTAGGGAGAAGGGTTCCTGGACATAGACACTCTTAACATTTTCACAAACTAGAACCTCCAAGGCTTCTGCCTGTGCAATAGCTGAGCTGAGACCTTTTTTTTCTGGAGATTGCAGTTCTACTCCCATTATTCTGGCTCCCTTGCCTAAGTCCAAACACCTATAAGCCATCACAACTTCCACTTTGTACTGATGTAACTCCCCTATTCACCAATCACACATGAGCTCACTAGTGTTAACAGAACCAACTGTTTCTTTCTCCATTTGATACTTGCTGGACATCACCTTAGTTTTCAGCTTGTATTGCTGTTAGACTCACTGCTGTCTTTTTTTCCTTAATTACTTTATTAACAGACTCATTCACTCCTGTCTCTTAAACAGATTTAAGCTTTGTAGTTTCTGGCATGTTCCATTTCTTTTTCCTAATCTGCTATGTCTTCACATAGGCCTGGGTGTCAATTACCAAAATGATTTGTTATCCGATAGCTCATACAGTACACTTTGTTTCTATCTGTAGATTGTACACTCCTTGAGGGGAGGGCTCATGTGTTTAGACTCTATTTACATCTCCTACCACATATGAGAGTATAAGAAAATATACTTATTGGTGAATTGATTTAAAAATTACAAACACATTATATCTAATTATTATTAGTGTTAGTTAATACTTTTATGTAGATGAAAGAAAATTCACAAAGAAATTAGTGTATGTAAGGGAAAAAAGCATGGACTTCTTAGTGAAATCACTCTGGATATTGAATAGCATGTGATATCAGGAAAATTGCTAAACTCTGTTAGTTCCAGCTTCTTCATTGCTAAAATAGAGAAAATGAAACCTAACTCCATGCTTTGTTGCCAGAATTACAAGAGTTAAGAAATAATATATTAATTATTTAAACACTTCATATAGTGTTGAACATGTAATGAGTGGTCAGTAACTAGAGACCCCAGGATTTTGGGGGAAGATCAGTCAGCACCTTGTTTTTATGACCCATATAAAAGAAATAGCGTACTGGCTTTCACAAGGCATAAACAATTGGACTTTGTGGTTATATATACATATTCACTAAGTTCTGTTTTGTGCCAAGCTCTATGCTAAGCATGTTAGGTACACTGTCTTAGGTAATCTTCAAAATTATTGCAGGTAGGTATTATTAGGAGCATTAGCAATAAGTAAGTTAAAGGTCTTAGCCAGCTTGGAGGGGCCAGAACTGAGCTTTAAACCCAGGTGTCTGACTCTGACGTCCATGCTTTTTATCAGTACTAAACTTCACCCTTCTTTTAGGAGATGTGTCATACTGATAGAGTATGGGCAGTTATTTGTCAGATGTATCAGATTGGGGCTGTTCTGCCAAGAGATGGAGTTGGAGTCTTTCATCTCAGAGTACTGAACCCTGAGTCTAACCAGCTCTCCAGGCAGGGGAGCTCTTCTTTTATGTGAATTACTGGCATAAATAAAGGATATCACTTGTCATTTGAGTACACTGAAGATTTTTTAAAACTGCCCCTTTCATTAAATTCACATTAGAAAATAGCACATTTCTCTGTAATAAGGTGCATTATTAATTACTAATCTCTCCCTTCTCCTTTAG
Seq C2 exon
GGCGACTCTGGAGGACCTCTGGTTAGTCCAGATGCTAGAGATATCTGGTACCTCGCTGGAATTGTGAGCTGGGGAGATGAATGTGGGCAACCCAATAAGCCTGGTGTTTATACTAAAGTGACTACCTTCCGGGACTGGATCACTTCCAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038520:ENSBTAT00000054325:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.3=88.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]