MmuINT0162648 @ mm10
Intron Retention
Gene
ENSMUSG00000054537 | Tmprss11e
Description
transmembrane protease, serine 11e [Source:MGI Symbol;Acc:MGI:3513175]
Coordinates
chr5:86705186-86709485:-
Coord C1 exon
chr5:86709343-86709485
Coord A exon
chr5:86707435-86709342
Coord C2 exon
chr5:86705186-86707434
Length
1908 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ACCTCTCTCTTTTTCCTTAGGGT
3' ss Score
13.38
Exon sequences
Seq C1 exon
GTTTCACCCAGAATAACCTTCGGCAAGTACAGGTGGACTACATAGATACCCAGACCTGCAATCAGCCTCAATCTTACAACGGAGCCATCACTCCTAGGATGTTGTGCGCTGGCTTCTTAAAAGGAGAAAAAGATGCGTGCCAG
Seq A exon
GTAAGGGCTTGCCTATTAGCATTCTGTACAACGACTTGTTCACCTTTCATTTCAAAATCATTATGGATTCACAGGAAGCTGTATATATTTCACAGATGAGTCACATGTCATCTTTTGTTTCTATTTTTTTTCCCTGTAATTTATTTTTTTATTCACTTTAGATCCTGGTCTCAGCCCCTCCCTCCTCTCCTCCAGTCCCCCCTCACAAATCCCTCCCTCATTATCTTCTCCCCTCCTTCTCTGAGAAGGAGAAGTTCCCCTTGTGTACCCTCCCATCCCAAGACATCAAGTTGCTGCAGGACTAAACGCATCCTCTCCCACTGAGGCCTGACCAGTCAGTCCAGCTGAGGGAAAGGGATCCGATGGCAGGCAACAGAGGCAGAGATAGCCTCTGCTTCGATTCTTTAAATAGCTTGTGCTACATGCTATTTTATTGTGTGTGTATGTGGACATGCATGTAACATGTCATGCATGTGGAAACCAGAGGTCAACTTTCTGGAGCGGTTTCTCTTCATTTGCATGCCTGTTTCAGGGATTGAGTGCAGGGAGCCAGGCTTGGTGGCAAATGATTTTGATGTACTGAGCCTTCTTGACAGCCCTCAAGTGTATTCTGTACCCAATTTTCTTCTATGGTTACACTCACATAGTTATGATAAAACTATAGGGAAATGTAGTTACGTAAAACCCGGGGAGTTGACAGTGGCCCAAAAATATGCATCTAGGTATATGTATTTTGCCACATTCAGATAGACTTATGGAATTGCCATTGCAGTTAATATGGAGTTTATTCCATCACCCTGAAGATCTACATTGGGTAATAAACTGGCTTCACCTTTGGTCTCTAATATCAGGCAATTGCTATTTTTCTCTATCTCTGTAATCTTGTGAATTTCAGAATGTTAAGTAAAATCACACAATTATTTGTTTTAGAATTCCATTTGATGTATCTGCTACTAATCTCTACTATTTCTTTGTAGAAAAAAAATCAGCAATTCCTCTAACTTGGTATAGATACATGTATGTGATATAGACCTTACCACAGTCCACTGGTATTAACTTTTTATTCACTGGAGTGGAGTATAGAGTAGAACAGATACCGCCCTTTAAATCTCATTATAATTCTTTTTTATTAAATATTAGCAAATACAATTATTTACATTTTCTTCTCCTTGGAGAGCTACATTAAGCAATGTTTTCCTTCATTGCTAAGCATAACATAAGCATTCAAGTGGAGAAGAAAATTCTGTTTACTCAAAGGTTTTCATGCCTCTTTATGTACAAGATTCCTTTTCTGTTTCAGGACTTTCCTGTAAGCATACTTTTAATGTAGGTCTGTTGATGATAAGGTTACTTTGTTTTGTTATTGTTGTTGTTGTTGTTGTTTTGTTGTTTGTTGTTTGTTGTTTGTTTTGTTTTTTTGTCTGACAAACCCATTACTTTTCCATCATTTCTGAAACGTAATTTTCCCAGATATAGAGTTTGAGATTGACTCCCTTTTGGGGGCCTTAACATCGTGAGCATTTGTGAGCAGGCTGTCCTGGGTATAAGGAACCAAACTCGGTTCTCTGAAGGGCACTACACACTTTTAGGAGTCAAGCCATTGTCTGTGTTAGTTCTCAGTAATAGGTTACTCACCACTTTCTGGTGGCTTAGATAATATTAAGGAGGTGGTGTGTCAGCTAAGTCCACATTACTGGTTCATTCTTCAGTGAATCGAAGACTTCAGTCTATGTACGGAAACCTGAGGCCTACACTGATCTCTCAGCAGCAGAACGCCTTTTGTAGGTAGCTGAACACCCTCCCCATACTAGAAAATCACCATGTTCATTATAGTTTACCTTGGTTAAGTAGCAAATTCTTCCTCCCTGAGCTGAGTTACAAACTAGCAACCTCTCTCTTTTTCCTTAG
Seq C2 exon
GGTGACTCGGGAGGTCCACTTGTTACTGCAGATGTTAGAGATATATGGTACCTTGCTGGAGTAGTGAGCTGGGGAGATGAATGTGGCCAACCCAATAAGCCTGGTGTTTACACTAGAGTGACCGCCTTCCGACACTGGATTGCTTCCAACACTGGTATCTAAACCAGAAAGACCCAGAGGGATGAAATGGATGGTTTTATCTGTTGACGGTTCTTGGAGACACACAAATGGAAAAGAAGCCTTGCAAACCAGGAGGGCCCGAAACACCACACTGAACAATCTGAAGTGTACATTTCCTTCCCAGCATTGCTCTTACAGGAGCATGTTGCTGCTGCCAGGTGAACTCTGCCATTTAATTTTCTACAAGTGTTCTGTCGCCCAAATTTCAGCTCAACCATCTAAAGTATTCATGCATACATCCAAGGTGAAACAACCCTTTCCTTCACTCGTCAGCTTCTCTCACATTAGAGTAAACTTCTTCTTTTCAAATGTAAGATAAGGAATAAAGTAAAATATAAGAAGAAAACAACTTACATTAGTGATATCTTAAAATAAAACCTGGGGGAATGATCATATTCAGTATAAAAGTTGAGCAAGCAGATGCAGCAACAGACTGCTCAAAATTTTATGTTGGAGAAATTGAGGAGACAGAGAAACTAACATATAACTTAATTTTCTTCCTAAATAACAAGAACAACACAAGAGCTACTGTTTCCTTTAGCTACATAATAACTCTCTGTAATGTACTTGTCATGAACAAACCAAAGCAAATATTATTTATTTGCAATTGTCTTGCAGAGGATGCCAATATACAACCAGTGATGAAATACACAAATCACCTACTTGCTTGACTTCATAACATGAAAATTAATGAAGGAATGGAGGGTGTGGTGTACGTTACTAATCAATTTACTGTAAATTCTCTCAAGGTTTGAGGGTAAATTAGAGGTTTATTTCAAAATAATCACCTCACCCTATGTGGTAAAATAATTGTATACTTGAATGGAATTTAAAAAGACTCAGTCTAAACTAACGACTCTGGTGGGATTATCCTTAACCTCTTCCAAACTGCAGATCTTGACTGGAATAAGGTTCAGATATTGGTGTGTAGTAAAAGCCATGTGACTGTAGTTGGCACTTGGTCTTTTTCTTTGAAATGATGGCAGATTTGCTTCCTCTGCCAGAACTTTCAGCCTGTGCATGAGAAGTGGGCATGGTACATTCATCTGTGCTGAGATGTTACTTGCTGGGTCGACAACATAGGGAAGGCATTCTGGAAGCTACATTAATGCTGTGCTGAATAGGTGCCCACTTAACACAGTACTGAAGAGAAAGAAACAATGTGATACTGGCCTCCGTTGTGATCTTACTTTGATAAATTATTGCTGATCCATTAGATATCCTATATCCAAATGATCCAGAATGTAATGAACTTAGGATGGATGCTGTGGTCTATGACATGTTAATGGTAAGTTTTCACCAGTGCATTCAGCAATCATCTCATTGTATATAGACTCAAAGAGAATACATAATATAGCATGTTGTACCATAGGATATTGAAAACCAAGATTGTCATGAAAAATATTGACTTCTATGAACTCAAATCATATTCACATATCAACTGATAATTTGACACTTGTCTAAAATAAGGTATAAAAACTGACATGAATTGTCAATATTCAATATTCTGAATTACTGTTCTATTTAATAAACTCTTTGGGGAAAATTGAGAAATTAGAAACTTTAAAGGTATATAAGACTATTAAAATTAGATTACTTTCAGAGACTTGTTAGAAAGTGATTTATGTGGCTGGAGAGATGCTCAGAGATTAGGTATTCATACAGTTCTTTCAGAGGATAGACAGTTGGTTCTCAGAACTCATATTGGACAGTGTTCAACAGATGTTAACTTCAGCTCTTGGGACATTCAACACCTTTGGCCTGTATGGGCACCTTTTCATAGGACCACACACAGATTACACACTTACAGAGAGTGGGAGAAATAGACCTCCTTAGAGAAGAATGTACCATGTGGTATCCAACTATATCCATTGGTATCCAATACTGAATGGTCCATCCTTAAATAAACATGTAAGTAGTATTATACAGGTTGAGCAGGTCGTACTTGTATATGTAGAAAAATATGTATCTTATGTAACAACAATTAATTAAAAAGGGACCACAAATTTGAAAAAGACCAAGAAGAGACAAATGGGAAGGCTTGGAGGAAGGAAAGAAAAGAAATAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054537:ENSMUST00000161306:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCTGCAATCAGCCTCAA
R:
CTCCTGGTTTGCAAGGCTTCT
Band lengths:
348-2256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types