RnoINT0153312 @ rn6
Intron Retention
Gene
ENSRNOG00000022255 | Tmprss11e
Description
transmembrane protease, serine 11e [Source:MGI Symbol;Acc:MGI:3513175]
Coordinates
chr14:23106388-23111252:+
Coord C1 exon
chr14:23106388-23106530
Coord A exon
chr14:23106531-23111090
Coord C2 exon
chr14:23111091-23111252
Length
4560 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ATCTCTCTGTTTTTCCTTAGGGT
3' ss Score
12.28
Exon sequences
Seq C1 exon
GTTTCGCCCAGAATTACCTTCGGCAAGTACAAGTGGACTACATAGACACCCAAACCTGCAATCGGCCTCAATCTTACAACGGTGCCATCACCCCTAGGATGTTGTGTGCTGGCTTTTTGAAAGGAGAAAAAGATGCATGCCAG
Seq A exon
GTAGGATTTGCTTATTAGTATACTGTACAGTGACACGCTCACCTTTCACTTCAAAATAATTATGGATTCACAGGAAGCTGCATACATTTCACAGAAGAGTCACATGTCTTCTTCTATTTTTATTTTTTCCTGTAATTTATGTTTTTTTTTATTCACTTTACATCCTGGTTTCTGCCTCTCCCTCCTCTCCTCCAGTCCCACTCTCACAAATCCCTCCCCTCGTTACCCTCTCCCCTCCTTCTCAGAGAAGGAGAAGCTCCCCTAGGGTACCCTCCTGCTCCAGGGCATCAAGCCTCAGCAGGACTAAACACATCCTCTCCCACTGAGGCCTGACCAGTCAGTGCAGCTAGGGGAAAGGGATCCAATGGCAGACAGCAGAGTCAGAGGCAGCCTCTGCTTCAATTCTTTAAAGAACGTGTACTACATGCTCTTTTATTTTATATGTATGTGGCCATGTGTGTAGCGTGACATGCATGTGGGAGCCAGAGGACAACTTTCTGGAGCGGGTTCTCTTCTTCTGTAGGCCTGGTCCAGGGATTCAGTGCAGGGAGCCAGGCTTGGGGGCAAATGATTTTGACAAACTGAACCTTTTTGCCAACCCTCAAGTGTACTCGTTACCCAGTTTTCTTCCATGGTTACACTCACATAGCTATGATAAAACTATAGGGAAATGTAATTATGTATGTAGAATCCAGGGAGTTGACAGTGGCCCAAAAATATGCATCTAGGTCTATGATATTTTGCCATACGCAGATAGATTTATAGACCTGCCATTGTAATTAATACGGAGATTCCATCTCTGTAATCCTGTGATTTTCAGAATGTTACGTAAAGTCACACAATGACTTGTTTTGGAATTCCGCCTGATTTGTCTACTACTACTCTTGATACTTCTTTGTAGAAAAAAATTAGCAGCTCCTCTAACTGGTTTATGTAAATACATGTATTCGATATATACCTTATCACAGTCCGCTGGTATTAACTTTTTGCAGTGGAGTGTAGAATAGGGAAAAAACCTTCCTTTAAATCTCATTATGATCCTTTTTTATTAAATATCAGTTAAATACAAATATTTACATTTCTTCTATGTGGAGAGCTACATTAGGAAATGTCTTCCTTCATTGCTAAGCATAACATCAGCTCTCAAGTGGAGGAGAAAGCAATCTGTTTACTTGAAGATTTTCAGGCCTCTTTCCTTTCAAGACTCCTTTTCTGTTTCAGGATTTCCTGTACGACTCCTTGAAACGTGACAAGGTTGCTTTGTTTTGTTTTGTTTTGCTTTTTGTCTGACAGAACCATTGCTTCCTCATCTTTTCTGAAATACAATTTTTCCAGATGTGTGCCTCTAGAGTTGGACCCTTTTCTTTGGGCCTTTACGTTATGAGCAGAATCTACAGCCACCCGTCTTGCCTGTATGTGACTCTCTCTGTGACTTCGCTCTTGTCTGCAAGAAGATTCTGTTTGATATTCTCTTAGCATGCTTTTCCTCGGCTTTATTCAGCTCGGGGTTTGCTCAGTTCTTTTGAATCTTTATGTCCTCTGCTCACCCAAGGGTATTTTCAGCCATGTTTTCTTTGAATTCTTTTTTTTTTTTTTTTTTTTGAGTTCCAACTTTGTCTTCCACTTCTGGGATTTGGAAGACAAACATGCTCTGTTTCTGGCGATAGTCCCAGAGGTTCATGAGGTGTCTATTATAGTCTCCACTTTATTTTTCTCTATTATTTGCTTGGGTGAGTTCTTAGATTCTAATTCAAGTCACCGTCCTTTTACCTCGCTTCTTCTATTAAGTTCATCTAATGAACCATGTTTTAAAGTTTGGCTATTGGATTATTACGTTCTAGAGTTTCTATTTTGTTCTCTCTTTGTGCCTAGGGATTCTTTGCTGAGATTTCCTTCCTTATTTCTCTAGTGTTCATCTGTCTCTCACATTGAGATACTGTGACTTTTAAAAGGGTGACTTTAAGATCTTTGTACGTGATACCACAGAGTTGGTGTCTGTATATTGCCTTTTATTGCTCAAGGGGGGAATTTCCTGGTTCTTCACAGAACGAGTAACGTCCACATGCATTCTGATATCTAACTACATAAGACTGCTGTTAAATTTTCTGTCTTAGGAGCCTCTGCGACTGCCACACTGACAGGATAGTATAAAGTTTTACCTCACTGCTAACCTAAGGACAGTGCCTCACTGTGTCTGCTCTTAGCTGGAGTTTCAGTGTCGCCGTGAAACCTTTGCTTTTATCACTTTGGCTGGACCACCTTGTCACCGGGTTCTTATAGATTGCTGACACCTCAGCGGAGTGGTTTCAATCCTACTTGGCAATTTCCAAAGTAATGACTCTCTAGTCATGTGTTCTCTGACCTCACTGTAATGAAAAGGGGCTTCTGACACATTACCTCATGGTTGTAGCCCATACTCCCCTGCGATGATTACAGAGGTGGGAGCAGAGGTCTTTGCTGTCCCCTAATAGGGAAGGTTGTCTGGGTGTCACATAGCCTGCTTGAACTCCAGTTTAGAGAGAAATGGGTCTGTTCATACAAATTTAAACTTAGGATTTTAAATTTCATCATAGTTCAAAACACAGACATCTCTTGAAACCCAGTTTGTCTCCTGGTATAAACTGTCTATGGTTGTCAATTCTGTGTCTTGGTCGGTATAAAAATGCATCTTTTTATAAGGTATATAAATGCTTTCTTCAAAAACACCACTGATAAAATATTGTAGAGGAAAACAATAATAATAACACCCCTCCCCCCCCAAAAAAACCCCAAAATAATTGTAGGTGGCTGAGTGATTCATTGTGTATGTCCTTCCTACAACTTTTACTTTGTAATTTAAAAGGACTAAGTTTAGCACGTTTTCTAAATCCCGCTTCTTTGAAATTTCATCTCATTTTCTGTGTTTCAATCTAGAGCACATGTATTACTGTCAAGATCTTGTTTTCACAGATTTTCATATTTTCTCTCGTGATTTCATGAGAACACTGCCTGTTTCCCCCTTCCTCCCATAGCCCCTTCAGACCACTAATGGTACCATACATATCTTTCCTGCTTTTCTCCCTGGATCAGTCATTTTAGCCGTGTTCAATTTGCTGCGTTGAGCTCTCAACCACTGCCAACCTTTCTGCGTGTCCATGGCCAGAGCTCAGGATTAGACTCACCGTGTTTATTTTTTCCCTCTCCTACCTTCATTGCTCCAGGGGTAACACGTGAAACAAACAAGGGTTATTCTGCAATCAACCTCCTCAGGCTGAAATCAAATAATGGAGGAGTTATTTGAAAGTACACTTGCCAATCTCATATTTGCAAATGTTTCCATTCACTACAGTATTTTATCCTGAATTCAATACTCAGGGCACTTTAATGATCCTCCCGAAACATGAGGGAGTAGGAGGGCACCTGAGTGTCAATTGTGCACACCTCAATTGAGGTAGAATTGTCTCTCAGTTTTCTACCCTTGTTGGGTTCTGTACAGCTTTAACATCACAAAAAGGCTAGTAACCAATAACGATACTGTTACGCTGTTAACTGTGTCTGGTCTTTTTTTTTAAAAAAAATCTCAGTGTTTGGCAGATTTCTCTTTTCTGTAACATGATCTGTCTTTGGATTTCATGACTCCTTTGGTTTGCCCTCTGTATTCTTTATATCTGGGAATTTAAAATTCAGATATCATATGAATTTTTCTGTATTGTTTATATTCCCGTTCAAATACACCATCTTAAAAAAATTAACCGAAATTGCTTTAATGACTTCCCCCCAAGATCCACATCTGCCAAATTAAACTCCTGTCCAAATTTAATCTCAAATTTCTACTCCAGAACCATTTCCATTCACATTTTATGTTATTAGTATGAGATGAAAAAAAATTTTTTTTTTGGTTTTTTTTTTCGGAGCTGGGGATCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCATGAGATGAAAATTTAATTGCCATCTCAAACTCTGTAGGATCGTAAAAATGCTGTTTTTACATATTTATTTTTTTATTACTTTTACTATGTGCACATGTGTGTCTGTGTGTGGATGTGAGTGCAGATGCCTGTGGAAGCCCAGAGTGTTGGATCTCCCTGGAGCTGCAGCTATAGGCATTCGTGAACAGGCTGTCCTGAGTACAAGGAACCAAACTCCGGCCCTCTGAAAAGTACTACATACTCCTAGTCGTCGAATAATTTCTCCAGCCTCAAATGTTAATGTGTTTCTCCTCAGTAACAGATTATTCACCACTCTCTGGTGGGTTGAATAATATTAATGAGGTAATGTATCAGCTAAGTCCACAGTACTGTTGTTCACTCTTCAGCTAAATGGAGACTTCCGGCTGTGTACCGGAATCTGAGGCCCAAACTGCTCTCCCAGCAGCAGAACGCCTTTTTTGTAGGTAGCTGAACACGCCTTCCCCCCTCACCATACTTGAAAATCGCTGCGTTCATTATAGTTTATCTTGGCTAAATAACACATTCTTCCTTGGTGAGCTGAGATATAAATGAACAATCTCTCTGTTTTTCCTTAG
Seq C2 exon
GGTGACTCCGGAGGCCCACTCGTTACTCCGGATGTTAGAGATGTCTGGTACCTTGCTGGAGTCGTGAGCTGGGGGGATGAATGTGGCCAACCCAATAAGCCTGGTGTTTATACGAGAGTGACGGCCTTCCGAGACTGGATTACTTCCAACACTGGTATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022255:ENSRNOT00000036948:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]