DreINT0165400 @ danRer10
Intron Retention
Gene
ENSDARG00000087717 | tmprss5
Description
transmembrane protease, serine 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]
Coordinates
chr15:18228541-18228927:-
Coord C1 exon
chr15:18228785-18228927
Coord A exon
chr15:18228694-18228784
Coord C2 exon
chr15:18228541-18228693
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ACAAGTCTTCTTTTCATTAGGGG
3' ss Score
5.52
Exon sequences
Seq C1 exon
TTCTTATACCAGAAGTTCTCAAAGAGGCACCCGTACCTTTAATAAGCACAAAGAAATGCAATAGCTCTTGCATGTACAATGGAGAGATCACCTCTCGAATGCTCTGCGCAGGATACTCTGAAGGAAAAGTAGACGCATGTCAG
Seq A exon
GTGAGATCAATGCTACTCAAAATGTTTGGTACAATATTATGGAATTTCTATATGCGTAACAAGAAGCAGTAACAAGTCTTCTTTTCATTAG
Seq C2 exon
GGGGACAGTGGTGGTCCTCTGGTTTGCCAGGATGAAAATGTCTGGAGGCTGGTTGGAGTTGTAAGCTGGGGAACAGGCTGTGCTGAGCCAAACCATCCAGGAGTTTATAGCAAAGTGGCTGAGTTTTTAGGGTGGATATATGACATTATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087717:ENSDART00000156505:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.3=88.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGAGGCACCCGTACCTT
R:
TCCAACCAGCCTCCAGACATT
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]