RnoINT0153410 @ rn6
Intron Retention
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53426407-53426995:+
Coord C1 exon
chr8:53426407-53426549
Coord A exon
chr8:53426550-53426842
Coord C2 exon
chr8:53426843-53426995
Length
293 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
TCCTTTCCTGGATTCCTCAGGGA
3' ss Score
8.92
Exon sequences
Seq C1 exon
CTCATAGCTCAGATACACTGCAGGACACAATGGTACCCCTGCTTAGCACCGATCTCTGCAACAGCTCATGCATGTACAGTGGGGCACTCACACACCGCATGCTGTGTGCCGGCTACCTGGATGGAAGGGCAGATGCGTGCCAG
Seq A exon
GTGTGGCTGGTCGTGGAGGGAGGAATGGGGGACCTCCTGGTGGTGGAAGGAGGGGGCAGGAAACTTGCTGCAGCTTGATCCCTTGGTTAGTGCTCATGGATGGGGGATGGCAGACTACCTAGGGACTTCATACTACAAACAGTGTTATGGAAGGTAAAGTCAGCGGGTATAATGTCAAGAAGCAGGAGCCTTCCTCTCCTGCAGGAGAATTCATTCTCCATGGAAGACTGGTGCTGCTTCATCAGGCAGGTCTGACTTTTGTTTCTTTGTGTCTCCTTTCCTGGATTCCTCAG
Seq C2 exon
GGAGACAGTGGGGGACCCCTGGTGTGTCCCAGTGGTGACACGTGGCACCTTGTAGGGGTGGTCAGCTGGGGTCGTGGCTGTGCAGAGCCCAATCGCCCAGGTGTCTATGCCAAAGTAGCAGAGTTCCTGGACTGGATCCATGACACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058:ENSRNOT00000011107:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.5=88.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTCAGATACACTGCAGGACA
R:
CTGCACAGTGTCATGGATCCA
Band lengths:
292-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]