BtaINT0007581 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr6:85187710-85189437:-
Coord C1 exon
chr6:85189178-85189437
Coord A exon
chr6:85187853-85189177
Coord C2 exon
chr6:85187710-85187852
Length
1325 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTATATAATTTTTTCCCTAGGAA
3' ss Score
10.55
Exon sequences
Seq C1 exon
GGCCAGGGATCCCAAACAATGGAATGTTAGTTTCGGGCTCCTTTTAAGTGATCCACAAATACAGCGAAGTGTCAAGGATATTATAATTCATGAAAACTACCACTACCCCTCACACAAGAATGACATCGCTGTAGTGCGTCTGTCCTCACCAGTACTGTATACAAGCAATATCCGAAGAGCATGTCTTCCAGAAACTTCTTATGCATTCCCATCCAATTCTGATGTGGTGGTCACTGGATGGGGAACATTAAAGACTGATG
Seq A exon
GTGAGTTCCTAAACTTCTATCATTATATGGTTCGGGTTTTAGGAGTTTAAAAAGATACTCAGAATCACAGCTAAACCTGAGAAGTACTCTCTCTAGGTCATTTTAAAGGAGATGAAAACCAACTTCAATGACATTCATATACAAACTATAATTTCGTAGCATTTTTTTATGTAACTTCACTTCCCTTAACAATGGCAGTTTTTACAGAAATGTAATATTTGAATGAATTGCTTATTACTTGAATAAGAAATTCATTCACCTCCATTTCATTTATTGATTTACTCATTCAATAAACGTTTATTTTGATCACAACCTTTATTCCAAGTACTGTCCTAGGTCGTTTAGATATATTAGTAACTAAAATATGCAAATATTTTCTGCCCTTACAAAGCTCACATTCTTGGTAAAGGAAGACAGACAGTAATCATGAGATATAATAAATAAGATTACACAGCACATTTTCTGTAGGTAAGTACCATAGAAAAAGTAAGCACCACAGAAGATTGGACATTTTTGATGGGGTAAAATGAATGAACTTCTGTGACAAAGCAATACTTGAACGAAGACCATTTAAACGTGTGCATTTACATGACCCTAATAATGTAAGCATGTTGTGTTTGTGTTCATAAATGCATTTAAAAGCAGAAAAAATAAACCCCAAATTCCAAGATAGGATTATAGTAACAAACAGCAGAAAATCTAAAAATGATCATAAAATGTATATTTCCGGAATATGAGTTTTTCATTTTGTTTTCTAAAGTATATGTGTAATAAATATAAACTCCCAAAACAATTCAAAAGTAAAAAAATTCCATCAACATGGATGGACACACTTAGTATTTCTAAATATGGTCATTTTTAACAGTAGCTGGGTGTGTTCATAACATTATTTCCTTGTAAATAAGAAAGCACACAAATACAAGTTTAAATAAAACATATGTTTTACATTGATTTTGAACTTATACACAGTGTTAGATACTAATAACCTACTACTACTACTACTAAGTCGCTTCAGTCGTGTCCAACTCTGTGCGACCCCATAGACAGCAGCCCACCAGGCTCTGCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATGTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTTGTGTCCGACTCTTCAGACCCCATGGACTGCAGCCTACCAGACTCCTCCGTTCATGGCATTTTCCATCAAGAGTACAGGAGTGGGTTGCCATTGCCTTCTCCACTAATAACCTAGCCAGGGAGATTAATATTGACTTTAGAAAAAGTTATATAATTTTTTCCCTAG
Seq C2 exon
GAACAAGTCCTAATATACTCCAAAAGGGATTAGTGAAGATTATAGATAGCAAGATCTGCAACAGGAAAGTGGTATATGACGGTGCAATCACACCCGGGATGTTGTGTGCTGGGTTTCTGGAAGGAAGTGTCGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038648:ENSBTAT00000052687:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATGTTAGTTTCGGGCTCC
R:
ACAACATCCCGGGTGTGATTG
Band lengths:
346-1671
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]