MmuINT0162629 @ mm9
Intron Retention
Gene
ENSMUSG00000061184 | Tmprss11c
Description
transmembrane protease, serine 11c [Source:MGI Symbol;Acc:MGI:3521861]
Coordinates
chr5:86664457-86666905:-
Coord C1 exon
chr5:86666646-86666905
Coord A exon
chr5:86664600-86666645
Coord C2 exon
chr5:86664457-86664599
Length
2046 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
AATATTCTTTCTTTCTTCAGGAG
3' ss Score
9.86
Exon sequences
Seq C1 exon
GGCTGCAAACCCCAAAGACTGGAAAGTTAGCTTTGGGTTTCTTCTAAGTAAACCACAAGCACCACGAGCTGTCAAGAATATTATAATCCACGAGAACTACAGTTACCCTGCACATGATAATGACATAGCTGTTGTGCGTCTGTCTTCGCCAGTATTGTATGAAAGCAACATCCGAAGGGCTTGTCTACCAGAAGCTACTCAGAAGTTCCCACCCAACTCAGATGTAGTGGTCACTGGGTGGGGAACGTTAAAATCGGATG
Seq A exon
GTAAGTTCCTGACATCTTTTCATTACAGGACTCCAGCTTTAGGAATTAAAAAGAAACACATTAAGAATTACAACTAAATCTGAAAAAAAGATACTTCCTCTAGTTCATTTAAATTGGTGTAATGTGTGTGCAATGAACTGACTATTGTGCTGAGTATCATTTATTTAGAAACTATAATTTCATAGAGGTGTTGGCCAATTGCCCTGGTAATGGTGTCTCTCGGAGGGTTTTTAGGTTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTTTGTTATGTTTTTGTTTTTTTTTTCATTTGGATTCATAATTTTCTCTGTGTCATTCATTCACTCAATAAATACTTATCTTTCATCAAAGAGGCAATATTTGAGCAAAGCCCACTTATCAAACACAGTCCGTGACCTCAATCCTGGAGAGAGTTTGGATCTAAATACGTCCAAAACACATTTTGAAAGCAGTAAAATGAAGCTAAAGGATTTTAAGATCTATAATCACAATTGTAAGCTTAGCTATAAAACTTTATAAATGACTATGAAATGTATGCTTCTGACATGTGAAATTTTTATTTTATTTTCTAAAACATGCATAGCAAATGTAAAACTCTAAAACAGTTTTTAAAAAATTATCCGTGCTTGCTTCGGCAGCATATATACTAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCACAAGGATGACACGCAAATTCGTGAAGTGTTCCATATTTTTACTACTCAGCTATTTAAAAAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCGCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAACTTGCTAAACGCATGAAATTCAAGAAGAAGGAAGACCAAAGTGCGGACACTTTACCCCTTCCTAGAAATGGGAACAAAACACCGATGGAAGGAGTTACAGAGACAAAATTTGGAGCTGTGACAAAAAGATGGACCATCTAGTGATTGCCATATGCAGGGATCCATCCCATAATCAGCTTCTAAACGCTGACACCATTGCACACACTAGCAAAATTTTGCTGAAAGGACCCAGATATAGCTCTCTCTTGTGAAACTATGCCGGGGCCTAGCAAATACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGCAGGAGCTAGAGATATTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAACAACAATATGAACTAATCAGTACCCCGGAGCTCTTGTCTCTAGCTGCATATACATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTGGACTTGCCAACTTTAAATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGATTGGGGGGTGGGTATGGAGGACCTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATAAAAAAAATTTTTTAAAAATTATCCTATCACATACGACATGCAAACTAATTCTGGGCATGATTGTTTCTAGAAATCGTTTGTTTGTAAATAGTTCTCACGTTATCTAAAATGTTTTCTATTGCCTGAAAAAAAACAGTTTTAAAATTAAAAAACAATTTTAAACAGAAACTTTATCGAGTTTCAGAGACAATAATATTGAGTTTCAAAAGAATTAACACAATCTGGAGGGCTTGCAAGATGGCTGAGCAGGTCAAGATGCTTGCCTCCAAGCCTCAGGACCTGTGTTTGATACGTAGAACCCACACACATACTAGAAACAAAACACTGACACTCAAGTAGTGACCTCTGACCTTCACATCCATGCATATGCATGCATGTGCACACACACACTTTCTCACACAGTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGATTTTTAAGTTCTCTTTTTAAATTAAATAATATTCTTTCTTTCTTCAG
Seq C2 exon
GAGACAGTCCTAATATTCTCCAGAAAGGAAAAGTGAAGATTATAGACAATAAGACCTGTAATAGTGGAAAGGCATATGGTGGCATGATCACACCTGGAATGATGTGTGCTGGGTTCCTGAAGGGACGTGTTGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061184-Tmprss11c:NM_001030297:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: