BtaINT0007582 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr6:85177921-85187852:-
Coord C1 exon
chr6:85187710-85187852
Coord A exon
chr6:85178083-85187709
Coord C2 exon
chr6:85177921-85178082
Length
9627 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
ATATATCCTTTTCTCTCTAGGGT
3' ss Score
10.21
Exon sequences
Seq C1 exon
GAACAAGTCCTAATATACTCCAAAAGGGATTAGTGAAGATTATAGATAGCAAGATCTGCAACAGGAAAGTGGTATATGACGGTGCAATCACACCCGGGATGTTGTGTGCTGGGTTTCTGGAAGGAAGTGTCGATGCCTGCCAG
Seq A exon
GTAAATCTGCTTATTCTGTTTTCAAACGGATTTTTTTGTATGATTTTTAATTTCCAATTAATCTGTTCAATGGTCTCAAAAGACTGATAATCTTTAAAGACTGAAGTACGTATTATAGCCAAAGTAGCTGATTAAAATTATATTTCTTATATATAATGATAGGTCTCACTAAAGTATTAACGGGCTAAATCACCCTTACTGAAAGGGGATGAGAATCAATTTCAAATAAACAATGAAGAGATGCAACTGAATATTTGTAACTTTATTTCAACTGGTCCTCTTTCACTGGGAAACACAACTGGGTCTGACAACAGGACTAAGGATTGTGGAGCTTTTTTGATTTAGGGTGGCTCCAACACCTTAAATATTTGATTTATTTAACATTTATATAGCATCTTCATGAGCTAGGCACTGTTTTAAGCTCTTTAAAAATAATTTAGTTGGGCTATAACAATCTTGTGATGTATGCTTATACTATTATAAACCCAACTTCTCAAATGAAGAGACTGGGACAAGTAGTTCAAGTAATGTCTAAACTAACACAGGTATTCAATGATAAAACTGAGAATAAGTTCAAGAAATTAGACTCCACCAACTCTAATTTGAATGCCACACCAAGTTTCCTTTCCATATGCTTCAGTTCAGTTCAGTTCAGTCGCTCAGTCATGTCTGACTCTTTGCGACCCCATGAATCACAACACACCAGGCCTCCCTGTCCATCACCATCTCCCAGAGTTCACTCAAACTCACGTCCATCAAGTCAGTGATCCCATCCAGCCATCTCATCCTCTGTCCTGCCCTTTTCCTCCTGCCCCCAAATCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCACATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCCTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTTGGTGCTCAGCTTTCTTCAGTCCAACTCTCACATCCATACATGACCGCAGGAAAAACCATAGCCTTGACTAGATGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTCAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGTGTCTTTTAATTTCATGGCTGCAGTCACCATCTGTAGTGATTTTGGAGCCCAGAAAAATAAAGTCTGACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCGGATGCCACGATCTTTGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCACTTTCACTTTCATCAAGAGGCTTTTGAGTTCCTCTTCACTTTCTGCCTTAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCGGCAATCTTGATTCCAGCTTGTGTTTCTTCCAGTCCAGCGTTTCTCATGATGTACTCTGCATAGAAGTTAAATAAACAGGGTGACAATATACAGCCTTGACATACTCCTTTTTCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTGCTGACCTGCATACAAATTTCTCAAGAGGCAGGTCAGGTGGTCTGGTACTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGGGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTCCATGATCCAGCGGATGTTGGGAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCAGGAAGTTCATGGTTCACATATTGCTGAAGCCTGGCTTGGAGAATTTTGAGTATTACTTTACTAGCGTGTGAGATGAGTGCAGTTGTGCGGTAGTTTGAACATTCTTTGGCATTGCCTTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAATCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGCGCAGCACTTTCACAGCATCATCTTTCAGGATTTGCAATAGCTCAACTGGAATTCCATTACCTCCACTAGCTTTGTTCGTAGTGATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATGTCTGGCTCTAGGTCAGTGATCACACCATCGTGATTATCTGGGTCATGAAGATCTTTTTTGTACAGTTCTTCTGTGTATTCTTGCCATCTCTTCTTAATATCTTCTGCTTCTGTTAGGTCCATACCATTTCTGTCCTTTATCGAGCTCATCTTTGCATGAAATGTTCCCTTTGTATCTCTAATTTTCTTGAAGAGATCTCTAGTCTTTCCCATTCTGCTGTTTTCCTCTATTTCTTTGCACTGAGGAAGGCTTTCTTATCTCTTCTTGCTTTTCTTTGGAACTCTGCATTCAGATGTTTATATCTTTCCTTTTCTCCTTTGCTTTTCGCTTTCTCTTCTTTTCACAGCTATTTGTAAGGCCTCCCCAGACAGCCATTTTGCTTTTTTGCATTTCTTTTCTATGGGAATGGTCTTGATCCCTGTCTCCTGTACAATGTCATGAACTCATTCCATAGTTCATCAGGCACTCTGTCTAAGACCACAGTTCAAAAGCATCAATTCTTTGGCGCTCAGCTTTCTTCACAGTCCAACTCTCACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTAGATGGACCTTTGTCGGCAAAGTAATGTCTCTGCTTTTCAATATGCTATCTAGGTTGGTCATAAATTTTCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAATCACCATCTGCAGTGATTTTGGAGCCCCCAAAAATAAAGTCTGACACTGTTTCCACTATTTCTCCATCTATTTCCCAGGAAGTGATGGGACCAGATGCCATGATCTTCGTTTTCTGGATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTCTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATGCTTCAAATACTTCTGATGCTGTTTATAAGCAATAGTCCTAGAACCGACAAAAATACTATTGTAGTTATCTAGGCAGGCAGAATCAGTGATAAATCCAGAAGGATTCTTATCCTACTCATTCAATTCACTCATTATTCTTGCACTGTAGGAGCTAGATTTCATGCAAACAAGAACTTGTAATACATAATTATCATTTCTTATTACTTATTCCCATCTTCCCAACTGTCTCATTAAACTTACTCTTCAACATCATTACAAACTTAAATTCTGTTTCTCTCAACTTTATCCCAGTCTATCACCCTCTACCCCATGACTCTCTTCTAAATTTGTGCACCCTAGAATCCATGTTTTATTGTTTCAGCCACTCCATTGACAGCACCATCAATGATTTCATCATCTTTTGATTCCCCCACACCCATCTTAATCTCCAAACACAAAGAAATCTATTTGCCTTACTTGCTTTTATATATGATCCACTGTTCATGGGGTTCTCAAGGCAAGTACTGAAGTGGTTTGCATTCTTTTAATGGTTTGCCTACAAGACCTTTTAGAACTAATACCCAAAAGAGATGTCCTTTTCATTATAGGGGACTGGAATGCAAAAGTAGGAAGTCAAGAAACACCTGGAGTAACAGGCAAATTTGGCCTTAGAATACGGAATGAAGCAGGGCAAAGGCTAATAGAGTATTGCTAAGAGAATGAACTGGTCATAGCAAACACCCTCTTTCAGCAACACAAGAGAAGACTCTACAAACATGGACATTGCCAGGTGGTCAATACCGATATCAGATTGATTATATTCTTTGCAGCCAAAAATGGAGAAGCTCTATACAGTCAGCAAAAACAAGACCAGGAGCTAACTGTGGCTCAGATCATGAACGTCTTATTGTCAAATTCAGACTTAAATTGAAGAAAGGAGAGAAAACCACTAGACTATTCAGTTATGACCTAAATCAAATCCCTTACAATTATACGGTGGAAGTGACAAATAGATTCAAGGGATTACATCTGATACACAGAGTGCCTGAAGAACTATGGATGAAGGTTCGTGACACTGTACAGAAAACAAGGATCAAGACCATCTGCCAAAAAAGAAATGCAAAAAGGCAAAATGGTTGTCTGAGAAGGCCTTACAAATAGCTGTGAAAACAAGAGAAGTGAAAGGCAATGGAGAAAAGGAAAGATATACCCATTTGAATGCAGAGTTCCAAAGAATAGCAAGAAGAGATAAGAAAGCCTTTCTCAATCATCAGTGCAAAGAAATAGAGGAAAACAATAGAGTGGGAAAAACTAGAGATCTCTTCAAGAAAATTAGAGATACCAAGGGAACATTTCATGGAAAGATGGACAAAAAAAGGACAGAAATGGTATGGACCTAACAGAAGCAGAAGATATTAAGAAGAGGTGGCAAGAATACACAGAAGAACTATACAAAAAAGATCTTCACAGCCCAGATAATCACGATGGTGTGATCATTCACCTAGAGCCAGATATTCTGGAATGTGAAGTCAAGTGGCTCTTAGGATGCATCACTACGAACAAAGCCAGTGGAAGTGATGGAATTCCCATTGAGTTATTTCAAATTCTAAAAGATGATGCTGTGAAAGTGCTGCACTCAGTATGCCAGCAAATTTGGAAAACTCAGCAGTGGCCACAGGATTGGAAAAGGTCAGTTTTCATTCCAATCACAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACTGCACAATTGCACTCATCCCACATGCTAGCAAAGTAATGCTCAAAGCCAGACTTCAGCAATATGTGAACCGTGAACTTTCAGATGTTCAAGCTGGTTTTAGAAAAGGCAGAGGAACAAGAGATCAAATTGCCAACATCCACTGGATGAACAAAAAAGCAAGAGAGTTCCAGGAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGTCTTTGAGTGGATCACAATAAACTGTGGAAAATTCTGAAAGAGATGGGAATACCAGACCACCTGACCTGCCTCTTGAGAAACCTGTATGCAGGTCAGGAAACAACAGTTAGAACTGGACATGCAACAACAGACTGGTTCGAAATAGGAAAAGGAGTACATCAAGGCTGTATATTATCACCCTGTTTATTTAACTTATATGCGGAGTACATCATAAGAAACGCTGGGCTGGAGGAAGCACAAGCTGGAATCAGCATTGCTGGGAGAAATATTAATAACCTCAGATATGCAGATGACACCACCCTTAAGGCAGAAAGTGAAGAAGAACTAAAGAGTCTCTTGATGAAAGTAAAAGAGGAGACTGAAAAAATTGGCTTAAAACTCAACATTCAGAAAACTAAGATCATGGCATCTGGTCCCATCACATTATGGCAAATAGATGGGGAAACAATGGAAACAGTGACAGACTGTCTTTTCTTGGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTGCTCCTTGGAAGAAAAGTTCCAACCAACCTAGACAGCATAGTAAGAAGCAGAGACATTATTTTGCCAACAAATGTCCGTCTAGTCAAAGCTATGGTTTTTCCAGTAGTCATGTATGGATGTGGGAGTTGCACTATAAAGAAAGCTGAGCGCTATTGGAGAGATGGTGCGTGTGATAAAGAGGCAGGTTGAGGAGGGTAAGAGTTCCATTTGGGGTTTGTAAAATATGAGGTGCCTATGGAATATCCAGATACATATGTCCAATATATCATTGTAAATAAAAATCTTGAGCTCAGGAAAGAGTTCTAGCTATAGAGATATACCTTAAAGTCATTGTCATCTGGACAGTAGCTGTATTCATGAGCATGGATACAATAACTCAGTGTATAAAATAAGAAGCAGCTAAGTAACTGAACTCAGATATACATGCTTTTAAAGGGCTAACAGTAAGAGATAAGAATGATCAGAAAAACTGAAAAGCATAAGAAATTGATCTCACCAAAATCCAGGAATTGGAAAAAAAGGGGATGGTTAATAGTAACGTATAATATCAAGTTAACTGCTGGAAAGTGTCTATCAAATTCAACAATTGTTTATTGGTAAAGTTTGGAAAACTACTTTGGTAGAAAAACCATTTTGAATTTTTCTACCAATTGAGTAAAAGATTAAGTAAGTTGAGTAAAAGAGTATTAGTTTAATATAGTCTCATTTATTTTTTCTTTTGTTGCTCTTCCCTGAGAAGACATCCAAAAAGCTATTGCTAAAACCACTGTAAAAGTGATTACTGCTTACATTTTCCTCTAGGAGTTTTATGATTTTGGGTCTTATATTTTAATCTTTAATCCATTTTGAGTGTATTTTTGTATGTGGTGTAAGACAATGGTTCAGTTTCATTCTTTTGCATGTAACTGTCCAGTTTTCCTGGAAATGAAAGTGAAAGTCACTCAGTCATGTCTGATTCTTTGTGAAATTCCAGGCCAGAATAGCCTTTCCCTCCTCTAGGGTATCTTCCCAACTCAGGAATCAAATTCAGAATCCACACTGCAGGCAGATTCTTTACCAGTTGAGCCACAAGGAAAGCCCAAGCACCATTTATTAAAGAGGGTGCCTTTCCCCCATTGCATACTATTCTTGCCACATGAAAAGATGCCCAACATCATTAATTATCAGAGATTTGCAAATCAAAACTACAATGAGATATCACCTCATACCTGTTAAAATGGAAATTATGAAAAAGAAGATACAAGTGTTGGTGATTGCAAAGAAAAGGGAATCCTTGTACACTGTTGATGGGAATGTGAATTGGTGCAGCTGTTATGTTAACAGTTGGAAGTTCCTCAAAAAATTAAAAATATGACTACTTTATTAAATGGAAGCTTCCTAAGTGTCCATTGATAGGCGAATGTATAAAGAAGATGTGGTATATACACACACACACACACACACACACAATGGAATATGATTCAGCCATACAAAAGAATGAAATCTTGTCATTTGCAGCAACATGGATGGACCTGAAGGGTATTGTGCTAAGTGAAACAAGCAAGAGAGAATAACAGTTACTATATAATTTCACTTATATGTGAAATCTGAAAAACAAAATGAAACAGACTTATAGGAACAGAAAAGAACCTAGTGGCTACCAGAGGGGAAGGAGTAGGGGAACAGATGAAATAGGTGAAGAGAATTAAGGGGTACAAAATTCCAACTATAAAATAAATAATGAAGTAGAACATAGAAATATGTCAATAACACTGTAACAACTTTGCATGGTGACAGCGGTACCTGGACTTATCATTGTGATCAATTCATAATGTATTCAATATAAAAGATCAAATCACTATGTTATACACCTGAAAATAACATAATATTATATGTTAACTATAATTCAATTTAAAAAAAAAAGAAGTGAAGAAAAGAATGAGAAACTGGAAACTTCAGTATAGACTACTACATTAAGTTTGGGCTTCCCAGTGGCTCAGATGGTAAAGAATCTGCCTGCAATGCACGAGACCCGGGTTCAATCCTGGATCAGGAAGATCCCCTGGAGAAGGAAATGTCAACCCACTCCAGTATTTTTGCCTGGGAAATCCCATGGAGAGAGGAGCCTAGTAGACTACAGTCTATGAGGTTGCAAAGAGTCAGACATGACTGACCGATTAAGACTATTACTACGTTAAGTCCCTTTTATGAAACGAAGATAATTAGGACAATAGAAGAGCTTCTAATATCCAGAAATATTGTGATTTTTTCAGGTAGACAAACCAAAACAGGCAGACCAAAAAGTATATATGCCTACAGAGAAAAGGCAGTGAAGGAAATGAAGACATATTGGAAAAAAACACACAAAACAATTACTGAGAGAACAAAGTTTTGATTCAAAGAACAGATGAGGGGATTAACCCTGAAAAGAACCAAATACATCCATTTGCCTGAAAAGGAGAGTAAACATAGATGCGGGCTGATGTAGGTGAGCTGGGAAATCAAAAGGGACAAGGACAGGAAACAGAGATTGCTATCTGTTGCTCTCTACTTATTCCATCACTTTGAAGCTAAGTAAGATACTAGGTTCCAAGTGAGAAAATCAAATTTTTAAAAATTCTGAAATGAATCTTGTATGTTGCTGGTGGGAACATAAAATGGTAAGCCTATATGGAAAGCAGCATGGTAATAATTTTTCAAAAACATATAAAAATATATTAACCATACATTCCAGCATTTCCATGTCCCAGTATTCACCCAAAAGAATTAAAAGCAGGAACACAGATATTTGTACATCTATATTCATAGCAGCGTTATTCACAAGAGCCAAAAGACTGAAGCAGCACAACTTTCCATTGATGGAAAAATTGATAAACAAAATGTGATATATGCATAACATTACATATTATTCAGCCTTAAAAAGACGAAAATTCTGAGACACTCTACAACATAGATGAAACTTAAGACATTATGCTAACTGAAATAAGCCAGTCGCAGAAGTACAAATACTATACAACTCCATTCATGTGAGGCACTTGAAATAGTTAGATTCATAGAGACAGAAAGTAGAATGGTGACTGCCAGGACCTGGAGAAGGGGGACAATGAGGAGTAATCATTCAATGCTGGGTATAGAGTTTCAGTTGTCCAAGATGGAAAAGTTCTGGAGATGGGTGGTGATGATGATCACACAATATGAATGTACTTAATGCCATTGAATTGCATACTTAAAATGGTTAAAATGGTAATTTTATGTGTATTTTATACAACTGAAAAAAAATAATACTTTTTTTAAATTATGAAATGAGAAGAGATTTTACTGGCTTTTCTTAACAATGAGAATGAAATATGTCTAAGGACCCCTAACTACAGGGGAGAAGATGTTGGTTTAAGGATGTAAATTTGTGAAAGATTTTCTTTCACAGTGTATAGTTGGCCCAGATTGTGGTGGGGAGGAGGGTAAGAAGCTAAGAATCTTGTTGGCAGAGTAGTCATATGGATAAATCATGCACTATGGTCACATAAGAAAGATAGAAAGTAGGAGGTAAGTTAATACACTAGGAGAAAAGGGAGGAGTCAAAAATTAGCTTTCTCAAGAAGTTGAAGAGCAGATGTAGACTGAAAAGGAATGGAGTGAAAAAACTGCAAGTATAAGGCTGGTAATAGCATTTCAAAGGTGGAGCAGATCCAGGTGTTCCCCCAAGATTGGAAGAGCAATAGCCCAGTGCTGCTAGGGAGTAAATATAAACTACTTCTTTTTCAATATCTGTGTGAAAATGAGAGCGTTTAGGGAGATAATCAGAGAATTCCTCAGCATACTGATGATGGTATAAGCAACAATATCTTAACTATCTCTTTTGGGTAATAATTGAGTTGAAATTTTTCAAATGTATTTCCTATTATTATATTGTTGTATCCAAAGACATATATTGATGTCTTTGATTTAAATAAATGATTATAGAATTTAAAAGTGTTCTTGACTAGAATCATTTTAATATTGAAATATTTAGCTATTTTCCTTCTGTTTCTTCTGTCTTTACTACAGGAGAAAAAAATAAGCAATATTCATACTTAAATTGTAGTCGTTATATATATCCTTTTCTCTCTAG
Seq C2 exon
GGTGACTCTGGTGGACCTCTGGTTGGTGAAGATTATAAAGGCACTTGGTTCCTTGCTGGTATTGTAAGCTGGGGAGATGAGTGTGCCCTTCCAAACAAGCCTGGAGTCTACACTCGAGTGACACACTACAGAGACTGGATCATGTCCAAAACTGGTCTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038648:ENSBTAT00000052687:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]