MmuINT0162630 @ mm9
Intron Retention
Gene
ENSMUSG00000061184 | Tmprss11c
Description
transmembrane protease, serine 11c [Source:MGI Symbol;Acc:MGI:3521861]
Coordinates
chr5:86660506-86664599:-
Coord C1 exon
chr5:86664457-86664599
Coord A exon
chr5:86660939-86664456
Coord C2 exon
chr5:86660506-86660938
Length
3518 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
ATATATTTTTTTGTCTCCAGGGT
3' ss Score
9.3
Exon sequences
Seq C1 exon
GAGACAGTCCTAATATTCTCCAGAAAGGAAAAGTGAAGATTATAGACAATAAGACCTGTAATAGTGGAAAGGCATATGGTGGCATGATCACACCTGGAATGATGTGTGCTGGGTTCCTGAAGGGACGTGTTGATGCCTGCCAG
Seq A exon
GTAATTCTCCACAGTCACTTACATGATTTTTTTTTCTTGGTGGCTTTAGATTTCTAATGGCAATACGATTTTTCTCAATATTAAATTCATCTAATTAAAATATATATTGATATCAATAAAGTGCTGATTCAATATCAGCAGTCCTGTTAATGAAACCATGTGTGGAACTAGGGAGAGACTCAATGAGCACTGAATAGATGAACCACATCGCTGGTGGCTTCAGTTTGACTTGTCTGTCTCCAAGAAACCTTCTACTTACATTAACACTAAATCCATCATAGAGATTTCACAACCTGGCTCCACCATCCTAATTATTTTATTTATTTAACGTCTATGTGAAATCCCACATAAGAGGCATGATTTCAAGGTCATTGCAATATTCATTTACTTTAGTTATGGTAACCTTTGTGGCATATTTAGTTTGAAACACACCTCTGATGAGTAGTTTAGGCAAAGAGTCAAGGTAACTCATTTACCTTAAATGACAAATCGGGGAATTTTGATCTTGTGCCCATTCATTGAACTCTAAACCCAGAGACTTTTCCTTATCAATGTGTTGCTAATATTCCTATGCTATTAATGAGCAATCATCTTGGATTGTCTAGTAATAGTCTAGGCAGGCACAACCAATGCTAAACCCAGGAAGATATATAGCAATATTGAGATTAGTAAATGAATTCCTGTACTCTAAGAACAAGAAAGCATGCAAATAAATATTTATAACACACAATTGTCCTCTATGAAATGTAGGCTTTCATCATTCTATTTTTCATACTAAATTAAACTTATTCTTGAACATCATTAAGAGTTTAAACGCCCCACTGTACTTAATTGATTAACTAGACCTGTGTCTCCTAACCTGCCACTGCCTAAGATCTGCACTTCAGCAACTGTGTTTACTGCACCCCAGTGACTTCATCTTTTACTTCTTCACACCTGTTTTAATAATCTTTAATCACAGAGTCATCTATCAATTCTCCCAGCTACTAAGCACTAGATGAAATACTTCCTTCTTGTAAACCTAAGGAATTTAATAATAGTTGAGTGTATCTTTTACTGTGCTATGTCAAATCTTCGCCACATGCTTTTATTACATATTGCACTATGTCTTAGTCTTCCTTAGAAAATTATAGTTTTTTTAATAACTAGAAAATTGAAGAAATTGAATGAAAAACTCTTTAATTTCCTTTCTTCTTACTCCATTTCTATTTGTACCCATGTTCACTTGGTTTCAGCAAGTTTCTTCTACTATTTAAAACTAATCTTTTTCCTGTATTCTTCACTGTCTCCTCCCATCTTCACAACAATTTGTACTACCTATTAATGTTAACATTCATATTTTTAAATTTCCTTGTTCTGTTGATCCATTCTGTACATTCTGTAAATATCAAAACAAGTCTCTCATTCAAGCCAACTCTTAGGAATTTTCTGTAATTCATACAAAAAGCAATTGTAAAATGTAAATTAATACCAAAAGCACCATGTTCTGATTTTTAAATGGGAAAATTGCCTAAATAGACTTTTTTTTTTTTCAAAAGAAAAAATACAAATGAGGTCTAAAGAAATAGTTCAGTAGCATTATGCTTGCCATGCAAGCATGAAGACCTGAGATTGTATTCTCCTTCTTCCATTGGGAACATAGTAATCTATATAAATAATCATAGCATTTGGGAGACAGAGGAAGGAGGATCTATAGTTAGACAGTTAATTGGATTAGTGACCTCCAGGTTCAATGAGAAAACCTGTCACACACACACACACACACACACACACACACACACACACACAAAATAAGTTGAAGAGTGATGAAGGAAGACACATGACATGAATTTGTGATCATCACATGCATACAAATGTGCACACACACATGCATGTACATAAAAATCCAGAAATACATTTTTACATGAAAAGTGTTTTTATTAAATATTTTCTTTATATACATTTCAAATGCTATCCCGAAAGTTCCCTGTACGCTCCCCCCACCCTGCTCCCCTCCCCACCCACTCCCACTTCTTGGCCCTGGAATTCCCCTGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCACTGATGGCCAATTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTCAGCTCCTTTAGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCAATAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCATAGCCTCACAGGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTGGCATATGCAATTGTTCAAAATCAATGATCACAGGAGAGGAAAATTGAAAATACAATGAGATATCACTTTAAGACTTTAATTAAGATGATTATAATAAAAATTTAAAAATTGTCTACAAAGATATAAAGGAAATTATATGCTAGTGATAGGGACAGAAAATGGTGCAATCATGATGGAAAAATAGTATAGTGCTTCTAAAAACAAACAGAAAATGAAAAGGCCTACACAGAAAGTCAAAGTCAAATACTGCATGATCTCATGGAGACTTTAAAGATCGGCTCACTAATACAGAATAGAATGATGTCTGCTGAGGCTGGAGAGATGGCTGAGCATTTAAGAGCATACACTGCTCTTGCAGAAGACCTAACTAAGTTTCATTCCCAGCACCAGCATAAGGTGGCTCACACCTGCCTCTAACTACAGTGTTGGGGGATCCAAGCTCCCTTCTGGCCTCCAGAGTCTCTGGCATACATAAACATATATAGAAGTAAGAATATGTCTTTAAAACAACAGTAGTAATAATAACACTTATTAAAGGGCGAAGTTGGGAAGAAAGGGATGGATACTATTCAGAACAGGTTGTAAATTTTTGCTTTAAGAAGATTCTAATTTGGGGGATCTAATGTATAGCGCAATTACTTAACAACGTATCATCTACTTGAAATGTGATGAAAGTCGAATCTTAGTATTCTCATAGAAGAAAGCAAAAATGTGACATAAAAAGTTACTTTCCTTAATATAGGGAATAACATTTGCTCAAAAATGGAGAACTATGTCCAATTTAGTGGAGGGTAAATAGACACCTTCATTTTTCCCTCAGCATAACAGTAATATAGGAAAGACTGTTCCTCAATATGGTGGTGTTTGCATAAGAAGAAATACCTTCAATAACTAGTTAATAAATAAGTTGAAACTTTTCAAACTAATTTTCCATTATTACATTGCATTAGTCAGAGAAGTATACTGACATACTGGATTTTAGCATATAATAATGGGACAGATAAAATACGTTAGGCTAGCATCATTTCAAGTACTGAAATATCCAGTGTTTTGTTTTGTTTTAGTTTGTTTTGTTTTGTTTTGTTTTGTTGGTCTCCCCTGCCATTTCAACAAAAGAAAAACAGATATAATTTTTGTTGTTAACATATATTATTAACTATATATTTTTTTGTCTCCAG
Seq C2 exon
GGTGATTCTGGTGGACCATTGGTTAGTGAAGATTCTAAGGGCATCTGGTTCCTCGCTGGTATTGTAAGCTGGGGCGATGAATGTGCACTTCCAAACAAGCCTGGTGTCTACACTCGGGTGACATACTATCGAGACTGGATCACATCCAAAACTGGTCTCTAGTGTGGTTGTTCTTTGTAGATTCAAGCTCAGTGGTTGCATATCTGTTAAATATGTTTGTAATCCCAAAACCACATTTTCTTAGATATTTCTCCTCTTCTACACATTTAAATATAAAATTTAACAGCATGAAACTTTAGATTTAAGATGTTTATTAAAGTTTGGCATATCTTTAGTGAGATTATGAACCAAAATATATAATTTTCTCCTTTACCATTTTGAGGATAAGTATAATTATTAAAGTGAATATGGTTTGGTTTATTAATAAAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061184-Tmprss11c:NM_001030297:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: