BtaINT0007906 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BCJ7]
Coordinates
chr7:8399295-8399577:-
Coord C1 exon
chr7:8399517-8399577
Coord A exon
chr7:8399423-8399516
Coord C2 exon
chr7:8399295-8399422
Length
94 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCCGTGGCTATCTCTGCTAGGGG
3' ss Score
6.53
Exon sequences
Seq C1 exon
ATGTCAGCTGCTGTCGCACCCAAGGACATGGATTTTTACAACTTTCTGAAGCCCTGGCTGG
Seq A exon
GTGAGTAACTGTGTGTGAAGGGGATTGGGGACAACCCTGGGGGCCCAGGGGAAAGTTCTGCCCTTTGCCCACTCCCCGTGGCTATCTCTGCTAG
Seq C2 exon
GGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCAGGCACCGTTGCATGCTGACACCCACCTTCCACTTCAACATCCTGAAGCCCTATATGAAGATTTTCACCAAGAGCACAGACATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039337:ENSBTAT00000040185:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(4.7=90.5)
A:
NA
C2:
PF0006717=p450=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACCCAAGGACATGGATTT
R:
TGCATGATGTCTGTGCTCTTGG
Band lengths:
174-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]