BtaINT0007908 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BCJ7]
Coordinates
chr7:8397411-8399422:-
Coord C1 exon
chr7:8399295-8399422
Coord A exon
chr7:8397533-8399294
Coord C2 exon
chr7:8397411-8397532
Length
1762 bp
Sequences
Splice sites
5' ss Seq
CACATGAGT
5' ss Score
1.12
3' ss Seq
CTGTCTCCTTCTCTGTCCAGACC
3' ss Score
10.27
Exon sequences
Seq C1 exon
GGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCAGGCACCGTTGCATGCTGACACCCACCTTCCACTTCAACATCCTGAAGCCCTATATGAAGATTTTCACCAAGAGCACAGACATCATGCAC
Seq A exon
ATGAGTCTCTTGAACCCAGGGTCCCATCTGGAGTCTTGGGGATAACAGGGACTCAGAGACACCTTGTCTGGAACCTGGCTCTTGTGGGTGGCTTTAAGGCCATGGGCTCTTCCTTTCTGAACCGTGGTTTCTACAGTTGAAAAATAAGGATTATGTGATCCCTGCTTTGTAGGGTGGCCAAGATGACCTAATGGAATCATGTCTCTGGCACATAAGAGATGCTCAGAAGGTGTTAGTTTCTACATTTTCCTCAAAGAGGCCTTGGAAGCTTGAGACATGTTTGGTAAAAATGATGGATATTTTGTAGTAGTTATTCTAGAGTAACAAGTCACTTAAAAACAGTAAGTGCTTGGTATTGAGAAGTCTGTGAGTCAGTTGGCTGGTTCTTCTGGATGTAGATTGGGCCACTGGTGTATCTGTGATCAGCTAGGAAGTTTTGCTGATCTAGGGTCATTCTTCTCACATATTTTGGGCTTGGCTGGTTGCAGGCTGATCTCAGATGGCCTTACTCCGGGCAAAGGACTTCCTTTCATGTGATTCTCTCCCTTTAGAATGCACCTCAGGTTTGTTCACATGGCAGAAGCAGGGTTCCAACAGCCTGACAGGAAGGTGCAATGCTGCTTGGGAGCTTGGTTTAGGACGATCTACTCATCATTTTCACCAGAGTTTATTGGGAAAAGCAGGACTTACCCTGGTGGTTCAGTGGTAAAGAATTTGCCAGCAATGTAGGAGACATGGGTTTGATCCCTGGGTTGGGAACATCCCCTGGAGGAGGGCATGGAAACCCATTCCGGTATTCTTGCTGGGAGAATCTCATGGACAGAGGAGCTTAGAGGGCTGTGTTCCATGAGTTCTCTAAGAGCTGGACAGGACCGATCAACTAAGTATAGCACACTTTGGTGAAAGTAGATTGAAGGCCAGCTCAGAATCAAAGTAGGCTCCACCTACTAATAGAAGTTACTGAAAAAGCACATTGCAAAGGGTTTGGATATATATACATGGGGAAGGTCAGGAATTTGTGACGTGGTTGTGTCTTTTCCATACTTGCAAGCTGACAAGGGAGCTTGTTATTGTTTTGTGGATTCTGTCAGAAGACATGAGAGTCTTGGGTCACTGACAAAGGATAGTTTTTTACTCTTGGCATAGCAAATGGCACCTTCTTCTTGCTGGTTTGCATTCTTCCTTCAAGTCAACAAATCCCATGTGGATGACAAATTTGGACTTTGGTACCTACTCAAGTAGTATGTTTTATTATAGGGTGGAAGAATTCTAGATTTAGGGTGTCTGTGGCTTTTAGAACTAGAAGCAAGCCTGATATTTTAGGTTGTTTGCTGCAAACACAACTCTGAGAAATAGTCCAGATAAAGAACATCATGGACTGACAATTTTTTGGCATACCCAGCAAGATTATGCAAGAGTATTCAGGGCCCATGGAGAACTACATCTCTACACATAGGAACAGTTTATTCATCAGTTTCCATCAGTGAAGGTGATGAAAGCTAAAATTTGCTTAGCACTTAACTTTATGCAGTAAGTTGACCAAGGGTACAGAGAGAGCCAGAGGGTGAGCCAAGATTTAAAACCAGGTCACCTGATTCCCAGTCATGAGAACTTCATGTCCTAGCAGTACAGTAACAGCTTCCACTCCCACTCAAGCCTCATACTCTCTGGAGATTGTTTCCTGGGGCCAAGAGGCAGGATCTGGGGGAGCCCACCCAGGTGGTTTGGAATGGGCCCTAACTCTGTCTCCTTCTCTGTCCAG
Seq C2 exon
ACCAATTGGGAGTGCCTGGTCACCCAAGGCCACACCCGTCTGGACATGTTTGAACATGTCAGCCTCCTGACCCTGGACAGTCTGCAGAAATGTGTCTTCAGTTTTGACAGCAATTGCCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039337:ENSBTAT00000040185:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGGCTCCTGCTGAGT
R:
CCTGGCAATTGCTGTCAAAACT
Band lengths:
248-2010
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]