HsaINT0044471 @ hg19
Intron Retention
Gene
ENSG00000186204 | CYP4F12
Description
cytochrome P450, family 4, subfamily F, polypeptide 12 [Source:HGNC Symbol;Acc:18857]
Coordinates
chr19:15791202-15793320:+
Coord C1 exon
chr19:15791202-15791329
Coord A exon
chr19:15791330-15793198
Coord C2 exon
chr19:15793199-15793320
Length
1869 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
CTCTTCCCTTCTCTGGCCAGGAC
3' ss Score
10.3
Exon sequences
Seq C1 exon
GAGAAGGGATACTGCTGAGTGGCGGTGACAAGTGGAGCCGCCACCGTCGGATGCTGACGCCCGCCTTCCATTTCAACATCCTGAAGTCCTATATAACGATCTTCAACAAGAGTGCAAACATCATGCTT
Seq A exon
GTGAGTCCCTTGAAGTCTGGGTCCCAGATGGAGTCTTGGGGTGGAGGGACCATGGACACATCTGGTCTGGAATTTTGGCTCTTCTGGGTGGCACTGGGCCATTGCTCTTCCTCTCTGAGCCTTGGTTTCCTCATCTGTAAAATGGGGATGATAATCCCTACTTGAAAGGTCATTTACTTGGCACACAGTAGGTTCTCAGAAGGTGTCAGTTTCTGTGTTTTTCTCACAGAATCCCTGTAAACTCAAGAGAGTAAAAATGAAGATTGTGTAGTAGTCATTGCTGATTATAAACCACTTCAGAACTCATTGGCTTAGAGCCATAAGGGTTTACAATTGCTAACGAGTCTGTGAGACAGCTGGCCAGTTCTTCTGGATGTGGAAGGGATCACTCTTGGCACATGAGCAGCTGTGGGTCGGGGGGCAGCTTTGCTGATCCTGGCTCAGTTCATTCACGTTTGGGGCTTCAGTACCTTCAGACTCATCTGGGATGGGCTCAGCTGTGACACCTGGACTTTCCCCCATGTGATTCTCTGCCTCCAGAAGGCACCCTGTTGTTCACATGGCAGAGACTGGGCTCCGAGAAACTGAGAGGAGGCTGCAATGTCTGTGGACATTGTCTCTGCAATACTTCAAAGTTCAACCAGGTTTGAGTCTATTAGAGTTATTACATCATCATTTCACCACATTGTACTGGCCAAAGAAAGTCGAAAGTCAAAAGTCCAGTACAGACTCAAAGGGGTGTAAAATAGAACGCATCTCTTAATGGGAGTTGCTGAAAAATTACTGTGGAAAGGGTACGAATACAGGGAGAAGTGAAGAATTGGGGGTCAGGATTTTGTGAAGTGTCTAGGATTTGTTTTAAATATGCAAACTGATAAGTTAGCTTGTTACTGTCTCATGCATTCTAACAGATTCCTGGGTCAGAGACAAAGGGTAGTTGATTACTCATGGCACAATAAGCAACATGTACTTCTTGTTGGTTTGTATCCTTTTTCTGAGTCAACCTAAATTCCATGGGGGTGACACTGGTGGGCCTCTACATTAGCCTGCTCATGCAGTACATTGCATGACATACAATGGGCATTAGGCTTAGGGAATCTACTTTAATAGTGGCAGAAACAAGCCTGATATTGGTCCAGGAGGAGTCATTGCCTTATCTCTCCAGGTGGTTATCTGCAAATACAACTCTGAGAAATGGCTCAGGTAAGAACATCACAGTCTTGCATTGGTGGCATACGCAGCAAGGATGCTCAGGGCTGATGAAGAAGTGCCTCTTCCAACACAGGGATATTTTTGAAATGAATTTATTACAATGGAGATGAATAAAGCAAACATTTACTCATCATATGCCTGAGAAAATGTCATGTCCCAATGCCAGGATATAAGTTGTCTAAGTTAATTTTAATAATCCTGTGAGGTTATGGTTATTTTTGTCCTATTGCAGATGATGAACTGAGGGCCAGAGAGATTAGGGAGCTGGACAGAGTTCAACCAGCCAGGAAGTGAGCTAGGACTGGTGGAGCAGAGATTCTATCCTGGTTTATCTGGCCCCAAAGCAGATCACCTTGACCGTTATTGAATATTTGACAGGTGGGACCTAGAGGAGGGCAATATGTTGACCAAGGGCACATAGAGCATAGGAGACAGAGCTGAGACTTGAATGCAGGTCTCTTGACTCCAAGCCATGGGTCTTCATCTCCTATACTAACAGTTTCTGCTCGCATCCCAGTCTGGTCCTCGCTGGCAATGGGTTCCTGGGGCAGAGGACCAGGAGGCTGGTTGTGGGGGAGTCCATCCTGATGTTTGGGACTGGGGAGGGGCACAAAGGAGGCAGGGCCCAGCTCTAGCTCTCTTCCCTTCTCTGGCCAG
Seq C2 exon
GACAAGTGGCAGCACCTGGCCTCAGAGGGCAGCAGTTGTCTGGACATGTTTGAGCACATCAGCCTCATGACCTTGGACAGTCTACAGAAATGCATCTTCAGCTTTGACAGCCATTGTCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186204-CYP4F12:NM_023944:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(33.1=100)
A:
NA
C2:
PF0006717=p450=PD(10.5=66.7)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGGGATACTGCTGAGTGG
R:
CTGTCAAAGCTGAAGATGCATT
Band lengths:
238-2107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)