HsaEX0018328 @ hg19
Exon Skipping
Gene
ENSG00000186204 | CYP4F12
Description
cytochrome P450, family 4, subfamily F, polypeptide 12 [Source:HGNC Symbol;Acc:18857]
Coordinates
chr19:15791054-15793320:+
Coord C1 exon
chr19:15791054-15791329
Coord A exon
chr19:15791870-15791973
Coord C2 exon
chr19:15793199-15793320
Length
104 bp
Sequences
Splice sites
3' ss Seq
ATGTGATTCTCTGCCTCCAGAAG
3' ss Score
7.73
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
CTGCCATTGCACCCAAGGATAATCTCTTCATCAGGTTCCTGAAGCCCTGGCTGGGTGAGTACCTGCAGGTGAAAGGGGTTGGGGACAACCTTGCGGGGAGGGTAGGGGAAGTGCTGCTCTTGCCCACTGTCCTTGGCTGCCCTACTAGGAGAAGGGATACTGCTGAGTGGCGGTGACAAGTGGAGCCGCCACCGTCGGATGCTGACGCCCGCCTTCCATTTCAACATCCTGAAGTCCTATATAACGATCTTCAACAAGAGTGCAAACATCATGCTT
Seq A exon
AAGGCACCCTGTTGTTCACATGGCAGAGACTGGGCTCCGAGAAACTGAGAGGAGGCTGCAATGTCTGTGGACATTGTCTCTGCAATACTTCAAAGTTCAACCAG
Seq C2 exon
GACAAGTGGCAGCACCTGGCCTCAGAGGGCAGCAGTTGTCTGGACATGTTTGAGCACATCAGCCTCATGACCTTGGACAGTCTACAGAAATGCATCTTCAGCTTTGACAGCCATTGTCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186204_MULTIEX2-1/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(3.1=50.0)
A:
PF0006717=p450=PD(1.6=12.5)
C2:
PF0006717=p450=PD(10.5=66.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGGGGAAGTGCTGCTCTTG
R:
GGTCATGAGGCTGATGTGCTC
Band lengths:
247-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)