BtaINT0007910 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BCJ7]
Coordinates
chr7:8395526-8396730:-
Coord C1 exon
chr7:8396460-8396730
Coord A exon
chr7:8395556-8396459
Coord C2 exon
chr7:8395526-8395555
Length
904 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
GGATCTTGCTTTCTCTCCAGGAT
3' ss Score
9.23
Exon sequences
Seq C1 exon
GAAGCCCAGTGAATATATCACCACCATCTTTGAGCTCTGTGAGCTTGCGGCAAAGCGGAACAAGCAGATCTGCCTGCACACCGACTTCCTGTACTTCCTCACCCTGGATGGGTGGCACTTCCGCAGGGCCTGCCGCCTGGTGCACAACTTTACAGATTCCATCATCCAGGAGCAGCGCTGCACTCTCCCCAGTGAGAATATTGATGACTTCTTTAAGGCCAAGGTGAAGACCAAGACTTTGGACTTCATTGATGTGCTTCTGCTGAGCAAG
Seq A exon
GTAGGTTCCTCTGGGATCTGAGTTCAAGAGGTAGAATGGACTTTGATCTCATCAGAGAATTTGAATGGGATGTAGAGGGTCCTGGGGAGCTATGGAAGGTGCTTGTGGAAGGGAGGGATGGGTCAGGGATAAGTTTTAGAGATGGCCATGTGGAATATTGCCTGTGGGGGACTACTAAGTCTGAAACTGTGAAGGGCCTGAGATTTCACTCAAATGGGAAACTAATAAGTCAGTCTACCACAGAGATAGACTGTGTACATATGTATGTGTATGTACAGTATACACACAGAATCCTGGATCAGAGCAGCCCATTTGTTATTCATGGCAAAAACAGTAACCAGAGTAGAACTGTAGCTCTGCTACCCCATTCCTAAATTCCTTTGATGGCTCAAGTATGCTATTACCTGTACATGCCATCATACTTGCATCACATACCTCCAGATTTTTAAATTTGGAACTTATACAAGTCAGCTGATACATTTTCCCCTTTCTCCCTATGGAGAGAGGGAGAGAGAGAGACACAGGGAGAGAGATTATTCTGGAGCTTAAACAAATTCTTTTTGTTAAGAAGGCAAAGTCTAAAGTTTTTATATTTTTAAAACCCAGGTTCTAACCCAGGTTGCCAGGAACTTTTTATTTCCTTTCAGAAATCCCTCATTATTTTGAAATATAAAAATATTTATGGGTGACTGATTATTTTTTCACCATGGACAACATAGGAGACAAAGAGGTCAAGGAGGAAGTCTCTGGGGTGGGGCCTCTGGTGACAGAGTGCACAGGCGGTTTAAAATTTCAGGGTTGGCTTGGGTCTCTGGATGGATAACGGGGCTTCAGAGATTGTCTCAGTTTAGCCTCAGAAACCCTCTGAGCTAGAGCAATTCTAGGGATCTTGCTTTCTCTCCAG
Seq C2 exon
GATGAAGATGGGAAGGGATTGTCAGACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039337:ENSBTAT00000040185:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(22.4=100)
A:
NA
C2:
PF0006717=p450=FE(2.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCACCACCATCTTTGAGCTCTG
R:
TCGTCTGACAATCCCTTCCCA
Band lengths:
286-1190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]