HsaINT0044473 @ hg19
Intron Retention
Gene
ENSG00000186204 | CYP4F12
Description
cytochrome P450, family 4, subfamily F, polypeptide 12 [Source:HGNC Symbol;Acc:18857]
Coordinates
chr19:15794303-15795692:+
Coord C1 exon
chr19:15794303-15794573
Coord A exon
chr19:15794574-15795625
Coord C2 exon
chr19:15795626-15795692
Length
1052 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
GTGTCTTGCTTTCTCTTCAGGAT
3' ss Score
11.88
Exon sequences
Seq C1 exon
GAGGCCCAGTGAATATATTGCCACCATCTTGGAGCTCAGTGCCCTTGTAGAGAAAAGAAGCCAGCATATCCTCCAGCACATGGACTTTCTGTATTACCTCTCCCATGACGGGCGGCGCTTCCACAGGGCCTGCCGCCTGGTGCATGACTTCACAGACGCTGTCATCCGGGAGCGGCGTCGCACCCTCCCCACTCAGGGTATTGATGATTTTTTCAAAGACAAAGCCAAGTCCAAGACTTTGGATTTCATTGATGTGCTTCTGCTGAGCAAG
Seq A exon
GTAGGTTTCTCTATGATCTGAATTTAGGTGAGAGAATAGAGCTTCATGTCAAATGTCAGGTGAAATAAATTGGTTTTGATCCAAAGGGCACTGGGAGCCATGGAAGATGCTTGAGAAAGGGAAGGTCACAGATAGGTTTTAGAGATGACTTTATTGCATGCAGCCCACAGGGCACTGCTAATTCTGAAACTGTGAGGAGCATGATATTTTATTCAACTTATAAGTTAGTGTGTTAGTCTTTCACATTTTTATGTGTATCTATATGTCTATGTCTTTGTCTATGTCTGTATCTATGATAAAAGATGCACCAAACCCCTGGATCACAGCAGCCCATTAATTATTTACAGCAGTAACAGCAGGTGGAGTAGGATGGTAGTGCTGGCTCCCCATTCCTAGGGCAACACAATGTTTTTACCTGTAAATGCACAAGAATTTGCACCAAGGAGAGGGGCCCCCACATTATGAGTATTATAGCTTATATAGGACAGCTAGCTCATATGCTCCTTCTTTATTACAGGGTGAAAGTTAGAGACAGAGAAAGAGAGAGAGAGAGAATGCTTTGTTCTGGCGTATAAACTACCCCTCTCCTGTGAGATGGCAATTTCTAGAGTTTTATAACCCAAATATCTTCTGGAAAGATAAGATTCTCTGGGTTTACCACTCTAGAATGTCAGCAAATATTTTTGGAGCAATACATAATTTCTAACCTCCAAGGCAAATTGCCATTCAAATATCCTGTACCCCAGGTTGCCAGTATCTTTTTCTCTGAAAGTCTGTATTATGCAGAAAAATGAAAATATTCGAGAACCATTGATTCCTGTCACCAGGGTCCAAAGAGGAGGCAAAGGATCTGGGGGAAGCCCTTGGAGTTGGGGCTTTGGTGATGGTGAACAAGAGAGATCTAGACGTGCAGAGTGCATTTGAGTTTCTGGAAGATCAGAGCTTCAGAGATTATCTCAGGTTAGACTCCGGAGTCTCAGAGATAGTATAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTGCTTTCTCTTCAG
Seq C2 exon
GATGAAGATGGGAAGGCATTGTCAGATGAGGATATAAGAGCAGAGGCTGACACCTTCATGTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186204-CYP4F12:NM_023944:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(19.4=100)
A:
NA
C2:
PF0006717=p450=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGTGAATATATTGCCACCA
R:
TCCAAACATGAAGGTGTCAGCC
Band lengths:
334-1386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)