BtaINT0007912 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BCJ7]
Coordinates
chr7:8395181-8395523:-
Coord C1 exon
chr7:8395490-8395523
Coord A exon
chr7:8395311-8395489
Coord C2 exon
chr7:8395181-8395310
Length
179 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
GTCTTTCTGGATGCCCCCAGGCC
3' ss Score
8.39
Exon sequences
Seq C1 exon
ATCCGGGCTGAAGCTGACACCTTTATGTTTGAGG
Seq A exon
GTGAGGCCCCAGTGTGAGAAAACGCAGGGATAGGGTGTCTCTAAGCCCAGGAACTAGCCCAGTGGACCCTGGACCACCCCATCCCTCTCCATCCTCCTCATGGGCTTTACTATGGGGGTGTTGTCCACCCTGTGGTACTGAAGTAGTCCAGAGACACAAGTCTTTCTGGATGCCCCCAG
Seq C2 exon
GCCATGATACTACAGCCAGTGGCCTCTCCTGGATTCTGTACAACCTTGCAAAGCACCCAGAATACCAGGAGCGCTGCGGGCAGGAGGTGAAAGAGCTCCTGAGGGACTGTGAGTCTAAAGAGATTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039337:ENSBTAT00000040185:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(2.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGGGCTGAAGCTGACA
R:
CTCACAGTCCCTCAGGAGCTC
Band lengths:
147-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]