BtaINT0007978 @ bosTau6
Intron Retention
Description
Bos taurus zinc finger protein 177 (ZNF177), mRNA. [Source:RefSeq mRNA;Acc:NM_001102550]
Coordinates
chr7:15343014-15343663:+
Coord C1 exon
chr7:15343014-15343106
Coord A exon
chr7:15343107-15343475
Coord C2 exon
chr7:15343476-15343663
Length
369 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATTTCCCCATTCACTTTCAGATG
3' ss Score
10.82
Exon sequences
Seq C1 exon
GGTATCATCTCTGCAAACACAGTCCAATCACTGAGGTGGCGCAGGAAGAACTGAGGCCAGAGGGGAGAGGAATTCTCCAAAGTGCTTGTACAG
Seq A exon
GTGAGCCCCGGGCAGGAAGGGGTCATTGTATGGAATAGCCACAGCCTGTGAGTGGTGGTACAGTTGTCAGTCATTGTGAGCTAAGAAGGCTGAGACCATTACATGAGCTTTATGTCCCAAGCCTCCAGAATTCTATGTAAAATACCTCTCATTTCCGTTGCTTATTCCTATCATTGGCATCTTTTCCCAGAGAAAGCCAAGTTCCTAAATTAATTTCTCTGATCACTGGTTACATCTTCTCTCTCACATTTTCCTCCTATATTTAGGGTTATTAATTGAAAACAAATCAATAGCATGCCTGCCTCCTTTTTTCTTTCACCCCTACTTTTTCTCCCAATAATTATAAAAAATTTCCCCATTCACTTTCAG
Seq C2 exon
ATGGGGCTACTCAACTTAAATCAAAAGATGTAATTCTCATGCAGAATGTCCCTGGAGAAAAAACTGCCAATGGCATAAAAATGGTGAGATTCACTAGAAATGATTCCTGTTTTTTAAGACTGGGAGATCTCTGTGAATTTCAAGAAATTAAAACAGCAGCAGCACCCAAGCAAGAGGAGACACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039493:ENSBTAT00000056477:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCTCTGCAAACACAGTCCA
R:
CTCAAGTGTCTCCTCTTGCTTGG
Band lengths:
278-647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]