RnoINT0168216 @ rn6
Intron Retention
Gene
ENSRNOG00000033624 | Zfp426
Description
zinc finger protein 426 [Source:RGD Symbol;Acc:1590942]
Coordinates
chr8:21480219-21481735:-
Coord C1 exon
chr8:21481642-21481735
Coord A exon
chr8:21480302-21481641
Coord C2 exon
chr8:21480219-21480301
Length
1340 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTTTTCTGTTTTCACTTCAGAAT
3' ss Score
10.82
Exon sequences
Seq C1 exon
ACCTTGTACACAGGATATCAGCTCATCAAACCCAGTGTGATCTCTTGGTTGGAACAAGAAGAGTTTAGTACAGGGCAGAAGATAGTTTTTCCAG
Seq A exon
GTCAGTATTCATGGAAACTCTATTTAATGAGAGTTTAATCTGTTTGTAACTGAAATAAACTAAAAAAAAAAGCCCTTGTGTTAGACTGGAGAGATGGCTCAGTAGGTAAAGGTACTTGTGGCCAAGCCTGACAGCCTAAGTTCAGTCCCTATAACCCATGTGGTGGAAGGAGAGAACCAACTCCCAAAGTCTGGCACACTCTGTATGTGAGCTGTGATGCAAGTGTGTGCACACACACTCAGTAAGTGAATGGGTGGATGAATGGAAGGGCCTTATATTTCTGTGTTTGATGTGTGTATACTATGATGTGTGTATGATGTGTGTATTGCTGTGTGTTTGATGTGTTTTTGATGTGTGTATGATGTGTGTATGATATGTTTTTGATGAGTGTTTGATGAGTGTTTAATGTGTGTTTGATGAGTGTTTAATGTGTGTTTGATGAGTGTATGATGTGTGTGTGGTATATGTTTGATGGGTATGTGATGTGTGTTTGATGTGTGTATGATGTGTGTTTGATGTGTGTATGATGTGTTTTTGATGTGTGTATGATGTGTATGTGATGTGTGTTTGATGTGTGTATGATGTGTTTTTGATGTGTGTATGTGGGGGCATGCATGTGCTGCTGTAGTGCGTGTGTTGGGGTCAGCTCTCACCATCTACTTTGTCTGGCAGTGTGCTTGTTTGCTATTGCATGTGCCAGGCCCCAAAACTTGAGAGGATTTCTCTGTCTCAGTATCCCATCTTGTCATAGCTGTACTGGAATTACAGACACAGGCTGTCATGCCCAGCCTTAGGTGAGTTCTGGGGATCTGAACTCAGGTCCTCACACTTGCACAATATCATTTTACCTGTGGAATCATCCCAGCTCCTATAATGAAGCTCCTCAAAATAAAATTTGTCTCAGAACTCTGAGCAGAAAAAGAAAATCTTCAGCTTCCAGTACTCTTTTAGTTTATTTCTAATCAAAACTTTCTTTAAGTTTATTGCTTTGAGAAATGCTCTTTTTTTCCTTGGAAATTTTCTACAGTGTTTCCCTGGTAATTTCTATTCACCATCAGTTTTGACTTTTATAGAATAAACTTTTAATATGACCAGTGTCCTTATCCTGAAATTCCTGAAATCTGTCTAATCAGGAACCTGGCGTAGGATGGTTATGGAGTCAGTGCAGTGTGGGCCATGCAGTGAGTTCAAGGTGAGGCTGCTTAGTCTCAAAAACAGGACAGAAAAAAAAATACTCATCTCTTCTCAAATTCAAAATAAAGGAAATGAGCCCTATTTTTAGCTCCAGTTAAAAAATAACTCCATTTCTTTTTCTGTTTGTTTTTCTGTTTTCACTTCAG
Seq C2 exon
AATGGAAAATACAGCTCGAGACCCAGTGTTCAGCATCCCAGCAGGAGCTTTTGAGGGGTAACATATCCAACGGGATGCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033624:ENSRNOT00000038069:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]