Special

MmuINT0179978 @ mm9

Intron Retention

Gene
ENSMUSG00000058192 | Zfp846
Description
zinc finger protein 846 [Source:MGI Symbol;Acc:MGI:1924012]
Coordinates
chr9:20395257-20395865:+
Coord C1 exon
chr9:20395257-20395328
Coord A exon
chr9:20395329-20395782
Coord C2 exon
chr9:20395783-20395865
Length
454 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTTTTTCTGTTTATCTTCAGAAT
3' ss Score
10.35
Exon sequences
Seq C1 exon
GATGTGAGGTCATCAAACCCAGTCTGATCTCCTGGTTGGAAGAAGAGGATTTGCACAGAGAAGATCTCCAAG
Seq A exon
GTGAGTGAGTGTGAAGAGTATGTTTGCAATTCGAACGTGAAATCTTTTTAATTTCTTAATGGCTCTAAGTGTGAGCCATGTACTGGGAGAGAAAGGAAGCCCTCTATTCTTACTTTTTGCCTTCTCAGGTTTTCATGTAATTTTGCAAAATGACCTATTAGGTTTCATGGTTTTTGTCTGTTATATATTTGATCAGATCTTGCTACCTTGCAGCCCTAACAATATGATTTTCATTTACCATGAGTTTTAATTTTCAAAGAGTCAGTTTGAAATAAAACATTGAAAACGCACATCCTTAGTGCAGTCAACTTATTGACCTTGTCAAAATGATCACACTTTACTTCCTTTAGAACGAGGTTCAGTGGGACAATCAAAAAAGCCCATGGTTGCTGACTTTGTAACTGACCATTTATTTTTCTCCAACCCTTAATTTTGTTTTTCTGTTTATCTTCAG
Seq C2 exon
AATGGGAAATGCCACTTGGCACCCAAGAGTCACCATTGCATCAGGATTTTTTGAGGGGACAGACTTCCAGTGGAATACAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058192-Zfp846:NM_172919:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.080 A=NA C2=0.469
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000051593





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000111219, ENSMUSP00000131934
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr19:9471379-9473178 
LOW PSI
HsaINT0187652
(ZNF560)
Human
(hg19)
chr19:9582055-9583854 
LOW PSI
HsaINT0187652
(ZNF560)
Rat
(rn6)
chr8:21455168-21457147 
ALTERNATIVE
RnoINT0167909
(Zfp26)
Cow
(bosTau6)
chr1:121432970-121433798 
LOW PSI
BtaINT0005420
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chrUn_random:62785494-62785634 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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