BtaINT0005420 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr1:121432887-121433879:-
Coord C1 exon
chr1:121433799-121433879
Coord A exon
chr1:121432970-121433798
Coord C2 exon
chr1:121432887-121432969
Length
829 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATTATTCTCTTTTCCTTTAGAAT
3' ss Score
10.16
Exon sequences
Seq C1 exon
GATATCAAGCAATCAAACCCACTTTAATCTCTTGGTTGGAACAAGACGTATTAAAAACTGTGGAGAGAGGAATCCTCCAAG
Seq A exon
GTGAGCAATTATAAAGAACTTCCCATGTCAATTCAATTTCAGTGTGTTTTGAATTTATAAGAAGGAGGCTTATTGAAATGTGCTTTCTCTCAGAAGGCTGAGGATATTGGTTTCTAATGTTCCGTGGCTTCTTGAACTTCTCATACGTACATACATTTAATCAGACTTTCCTGTGATCTCACAAAATAGCCTTTTTTTTCTGTATTAGTTAAATTTTTTTTTTTTTTTTTTGAGGGGTGGGGCCTCTGTATATAGGCTTTTTGTTGCTGCTTGCAGGCTTTCTCTAGTTGCAGTGATCAGGGGCTACTCTACTTTTGGTGTGCAGGCTTCTCATTGGATAGTTTCTCTTGTTGCAGACAATGAGCTCTAGGGCCTCCAGACTTACTAGTTGTGTCACTTGGGCTCTACACTGCAGGCTCAGTCGTAGCACACAGCCTTGGCTCTTCCACAGCACATGCCATATTAGCTTCAGGACCAGAGATCTCACATGTGTCCCCTGCATTGGTAGGCAGATTCTTAATCACTGGACCACCAGTGAAGTCCCTTAGTTTTATCATGTAGATATATATTCTTTGTCCAGAACTTTCCCTAATAATATTCTCTTTTCTTCCTTTTTACTCTCCATAGACTCATCTTTTAAATCAAGTACTCAATACATATATATATTCTTGCTTAATTTTTGTCATTGTCAAATTCCTCACGTGTGTCTTGCCTTTTTAAAAGATATGTTAAATTGGAAAGTTACACAGATGAGCCTTATTGTTTTTAACCCCTTTAACATCCACTTCTTTGTGCAAAGTCTTAAATTTATTATTCTCTTTTCCTTTAG
Seq C2 exon
AATGGGAAATGCAACTTATATCCAATGACTTGGGAATTCAGCAGGATATTTTGCCAGAAAAAACATCAAATAGGGTACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025146:ENSBTAT00000054299:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development