RnoINT0167920 @ rn6
Intron Retention
Gene
ENSRNOG00000034037 | Zfp266
Description
zinc finger protein 266 [Source:RGD Symbol;Acc:1308643]
Coordinates
chr8:21517571-21519013:-
Coord C1 exon
chr8:21518714-21519013
Coord A exon
chr8:21517651-21518713
Coord C2 exon
chr8:21517571-21517650
Length
1063 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
CTCTCTCTATTTAACTTAAGAAT
3' ss Score
4.5
Exon sequences
Seq C1 exon
GTCCTTTTTGAACATAGAAATGTCTTTTCTGAGGTGCTAGAGATTGTACTGAGAGACTTGCATGTTAAGCTACATCCTTCCCTTCCCCATATTTGAATTTTAACTCAACTTTGAAAGAATTGCCTTCCTCTCACTTGAACTATGATTTCCTTGGCCATAGGAAAGTTTGTTATCGCCTGTTTGAGTCCCTTCCACTCATGTATGTTTCTGTATATGCAGGATGTCAGTTCTTCATTCCTAGTCTGACTCCCTGGCTAAAACAAGAAGAGTTAGGGGTGGCAGAAAGTGCTCTCCCTCAGC
Seq A exon
GTGAGTATTCATGGGGAAATCTGCTTTGACGACCTTGGTATTGTTTTGCCACTGTAGTCAAATTTTCTTTTACTGGCCTCAGAAATTGAATCCATTTTTCTCTGTGAGATAATCTGACATGCCCCATAATCCATTATTTCTGTGTATTCAGGCATACCCATGATCTTACAGCCTATGCGTTCCCTTTCCTAAATTTAGTATTTCAATGTTGTTTTTCCAGAGCTTTCTGACTTTCCTGTTGCTGGAACTGTCACAGGGTCAGTTTGTAGTTCGTTGACTCTGCCTTTTTTTTTTTAATTATAGCTTTTTTGTTGTTTATGTTTTGGAGGTGCTGGGGATTGAACCAGGGCTTGGGCCTGTGAGGCAACCATTCTACCTACTGAACAGTCTTATTACTAAATTTTTCACAGCACAGCAAAGCTGTGGAGGCCAGAGAACAACTCCAGAGTCGTACTCTCTTTCCACCATGTCACTACCAAGGCTTGAACTCAGGTTGTCAAGTTTGATGACAAGGTGACCTCCACCTTATATTTTGGGACCAGATCTCTCATGGAGGTCTGGGGTTTACTGACCACGCTAGGCTGGTTGTCGAGCGGTGAGCCTTAGGGAATCTGTTTGTCCCTGCCTCTCCAGTACTGGGATTATGAGTTTGTGCCACCATGCCCGGCATTTTAAAGTGGGTTAAAGGGTTCAAGCTCAAGTCCTTGTGATTTAACAACTAGCCGTCTCCCCGGTCTCTTTTTCCCGTTTTTCTCTTGTATAATTGAAACAGTCTTAGAATTATAGCCCAGGCTACTCTTAACAGTCTAAGAAGGTTCTCTGACTTAGCCTCCTATGTATTAAGATCACAGTTGGGCACCATTATGTCTGTCAGTCTTTATTTTCTTATCTTTTTTGTTTTTTAGCCTTAGCCATTAAAGGCTGAGACAACTTTCCAGCCCTCACTTTTATTCTCTTAATTTGCATAACTTGAAAAGAAGGACAAATGGCCCTCACCCTTTCATTCTTGTACACACCATTCATTTTCTGACCTTCTTACGTTCCTCTCTCTATTTAACTTAAG
Seq C2 exon
AATTGGAACTGCAGCCTACAATTGACGACTCAGAGCTGGAGAATTATTTTAGGATGCAAAGTTCCAGTGCAACAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034037:ENSRNOT00000042903:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTTTCTGAGGTGCTAGAGA
R:
TGCACTGGAACTTTGCATCCT
Band lengths:
351-1414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]