HsaINT0187660 @ hg19
Intron Retention
Gene
ENSG00000171469 | ZNF561
Description
zinc finger protein 561 [Source:HGNC Symbol;Acc:28684]
Coordinates
chr19:9724697-9727847:-
Coord C1 exon
chr19:9727721-9727847
Coord A exon
chr19:9724780-9727720
Coord C2 exon
chr19:9724697-9724779
Length
2941 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTTTTTCTGCTTAACTTTAGAAT
3' ss Score
9.08
Exon sequences
Seq C1 exon
GATTCAGTGACGTTTGATGATGTGGCTGTGGACTTCACCCCAGAGGAGTGGGCTTTACTGGACACAACTGAGAAATACCTCTACAGAGATGTGATGCTGGAGAACTACATGAACCTGGCCTCTGTGG
Seq A exon
GTAAGAGTAACATCACTATGCTTGGCATGGTGGCCTGCACCTGTAGTCCCAGATACTTGGGAGGCTGAGGTGGGAGAATCGCTGGAGCCTGGGAGTTTGATACTAGCATGGGCAACATTGTGATACCTTGTCTCTTAAAAAAAAAATTCTAGGCCGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGACGGATCACAAGGTCCAGAGATGGAGACCATCCTGCCTAACACTGTGAAACCCCGTCTCTACTAAAAAAATTCAAAAAAATTAGGTGGGCATAGTGGCAGGTACCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATTGCATGAACCCGGGAGGCGGATCTTGCAGTGAGCCAAGATCACACCACTGCACTCCAGCCTGGGTGACAGATTGAGACTCCATCTCAAAAAAAAAAATCCTAAAAATGAAGACTAGGCCGGTTGTGGTGGCTTACATCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACATGCGGTCAGGAATTTGAGACCAGCCTGGCCAAAATAGTGAATCCCCATCTCTACTAAAAATACAAAAATTAGCCAGACTTGTTGGCAGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGACAGGAGAATTGCTTGAACAAGGAGGCAGAAGTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCTGCCGGGGCGACACAGTGATACTTCGTCTAAAAAAAAATACATTAAAAATAAAAATAAACACTAGCATCATTTCTTGTAGCCTGTTATAGGGCAGATGTATGTTACATGCTTGCTTGTCAATTCTGAAAACAGTGGGGAATAACAGAGACAGTCCCAAAGTAACAGTCCCTGCTGTAGTATGTTTTAATTTACTGTGGTAATCCTGGAAACTTCATCAACAGCATCAGCTTTGTGCTGTAAGAAATATACATCTTCCTTCCCCTATTCTTTGATGTAGTAAATTGGAAACTCCAGGGTTGGAGCCCAGTCATCTGTGTTTTCAGAATCACTGAAGGTGAATCTAATATACTATCATGTTTGAGATCCAGTGGCAGAGTTGTTTACCCATGACAGCAAGCATCTTTTTGTAGTACTTAACTTTATTTCTGCTTTTTTTTTTTGAGACAGAGTCTCACTCCATCACCCAGGCTAGAGTGTAATGGTGCCACCTCAGCTCACTGCAACTTCAGCTTCCCAAGTTGCTGGTATTAGGCACACCTGCTACCATGCCCAGTTAAATTTTTTTTTTTTTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGGCCAGCCCGGTCTTGAACTCCTGACCTCGGGTGATCCACCCACCTCGGCCTCCCAGAGTGCTGGGATTATGGTGTAAGCCACTGCACCCAGCCTACTTACTTTATTTATTTATTATTTTTGTGACAGGGTCTTGCTCTGTCGCCCAGGCTGGAGTGCGGTGGTGCAATCTCTGTTTACTACAACCTCTGCCCTCCCAGGTTCAGGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGCCAAGTGTCACTGTGCCTAGCTAATTTTTGTATTTTTAGTAGAGAAGGAGTTTCACTATGTTGGCCAGGCTGGTCTTAAACTCCTGACCTCAAATGATCCACCCACCTCGACCTCCCAAAGTGTTAGGATTACAGGCATGAGCCACCACACCCAGCCTACTTTATTTCTTACTGAAATAAAAGTTTTAGTGCTTTACAGGTGTGTACATAAGTCTGAATTTGGGTTTAATGGGTCAGAGATAACCAATCTTTTTTGGGCACAGAAATGGAGATCTTAGCTTTTATATCCCTTTTGTAATAATTACATTGCTTGTATTAGAAATATATCTCCTGGCCAGGTGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATTGTCTGAGGCCAGGAGTTTGAGACCAGTGTGTCCTACACTGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGACGTGGTGGCACACGCCTTTAGTCCCAGCTAGTCAAGAGGCTGAGGCAGGAGAATCACTTCAACACAGAAGGCAGAGGTTGCATTGAGCCAACATTGTGCCACTGCGCTCCAGTGTGGGTGACAGAGTGACACTTCATCTCAAAAAAAAAAAAAAAAGATTTTTAAAGATGCACTTTGCCTCAGAAGATTTAAGCTATTTTTCTCAGAGTTTTGGATATCTTTGACTCTTATTTTCCATCTTGTCAAACATTCCTATGATCTAATAAAACTACCTGTTCTGTTTCTTTGTTAACTTTATCATTCTGATACATGCTGTTTATCTAGATCTTTCCTACTTTCCTTTCCCGAAAATCTACTCTTTCTGTTTTCCATCAGCTTTAATTTTCTTTTCTTTTCTGAAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAACTTCTGCCTCCCAGGTTCAAGCAATACTGCCTCAGCCTCACAAGTAGCTGGGATTATAGGCATGCGCCACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACTCCCGGCATTTTTAATTTTTACAGAAGTAGTTTGTAATAAACTATCTAAACACATCAGTTATGTAATAAACCCCACATCATTATAGCCAAATTTTTGATGTACCAAAATCCTCAAGGTTCTCTGGCTTTTATTTTATTGCTGTGTTTAATTTGAAAACAAGTAAAAATGACTCATTTTAAATGAATATTTCTTCTCTAAATCCTTACGTTTCTTTTTCTGCTTAACTTTAG
Seq C2 exon
AATGGGAAATACAACCTAGAACCAAACGGTCATCACTTCAGCAGGGTTTTTTGAAGAATCAAATATTCAGTGGGATACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171469-ZNF561:NM_152289:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)