MmuINT0178826 @ mm10
Intron Retention
Gene
ENSMUSG00000063108 | Zfp26
Description
zinc finger protein 26 [Source:MGI Symbol;Acc:MGI:99173]
Coordinates
chr9:20442180-20444367:-
Coord C1 exon
chr9:20444259-20444367
Coord A exon
chr9:20442266-20444258
Coord C2 exon
chr9:20442180-20442265
Length
1993 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
AATCTTGGGTTTAATTCTAGAAT
3' ss Score
5.2
Exon sequences
Seq C1 exon
GATGAGGCTGTGGATTTCTCTGAAGAGGAGTGGACTACAAAGGCTCCAACTCAGAACAGCAAGCCTGGTGCTGTGGCGGTGGAGGAGCACACAAGCCTGGCCGCTGTAG
Seq A exon
GTAAGTTGGTAGTTGTTTGCCTATGATGCTTCATGTGGAGCAGGTACAGATGATGTACTTAGTGTGCTTAGGAACCTTGTCAAGTCCAATGCGATAGATAGCAGTAATAACAGTTTTCTTCTAATGTATTTAAACTAACATGTTAGTTTAATTCAGGGGGCATCTACATCAAACTTCAGTACCTCCTATATGGTGTATATGCTTCATCACTGAGCTGCAGGCCTGGCACACTGTGGGTTGGCTTGTTTTTTGTGTGTCTGTGGTAGTGCACACCTTTAATTTTAGCACTTGGGAGGCAGAGACAGTTGGATGTTTGTGATTTCAAGGCTAGCCTGGTCTTATAGAGTTCCAGGACAACCGAGTGCTACTCAGAGAAACCCTATCAGAAACAAAAGCAAACAAAAAGGTTTATTTTTATTTATTGTTTTTTGTGTATAAGTGCAGGTGCACATATGCCAACAGCACATATGTGGAAATCAGAGAACAACAACTTGCTTCTCTGTGCTCATCTTGTTGTTTGAGGAAGGGCCATTGCTATTTTTGCCACAGTACTTCTGGCTGGTTGTCCAGTTTCTGCCTTTCATCTCACTGTAAGAATGCTGGGACTAGGATTACAGACGTGTGCCATTGCAGTTAATTTTTTACTACTTGGTGTCCTAGTTTACTCAATGTTGCTGTGGCAAAACCCCGAGTAAATAAGCAACCTGGGGAGGAAAAGGTTTATTTGGCTTACAGGTTATCCTCCATCCAGGGAAGCCAAGGCAGGAACCTAGAGGCAGAACCTGGAACAAACCATGCTTGCTGGCTTACTCCCTTAGGCTTGCTCAGCCACCTTTATTCTGACCTGGCAGGAGGTCTGCATCAGTTAACAGTCAAATAAAGGTTCTATAGACATGCCCGCTGGCCAAACTGATGGAGGCTATTCTTTAGTTGAGGTTCCTTCTTCCCCAGAGTGACATTGACAGACAAGATGTGAGTTCTGCTGTTGAACTGAGGTTGTCAGTGTTATTTGGAAAGCTTTTGTACCTGATGAGCTATCTTGATGACCCACTGTGGTGCTTCTTAAAATGTGCGTAACCTAGTTCTGTTGAAAAGTATGTTCTTGTCTCCATCTTTGATTAATGGGATAGCACTTTCTAGTTAGTATTCTATTTCATGACTATCTGAATTTGATGAACTATTATATTTGTAAGTTAATGGTTTACTTTATTCCTTAGCAAACATTGTAGTGATTCATTTTGTCAGAAATGTTAATATAAAATTAATTAATATTTTAGTGGTGAGAGATCCTTGGGATCGTGGGATTAAAGCCTTGTCTCTTTATCCTTTAGAAATAATTGCTGCACTTATTAGAATTATGGACCGAAAACCAGGTTTGATTGTGCATGCCTGTAATCTCAGTAGGCTTACAAGTTTTAGGGTCTAGCTTGGACTACAAGAGTCCCTGTATTGGGGAAAAATACATATTATAGACTTGAATCATAGAAAAGTTTGCTATTTGTTCTATTCATGCAACTTTGCATATAGGATATCAGACACTTATCAAACCCAGTGCTTTGACTTGTTGAAAGCAGTGGTGAGCACATTGGAGGGAGTTCTTCAAGGTGGATGCTTACGAAGAGCAGCATTGACTAACGGCATACATCATTGTCAGTTCCTCTCTTCTCTTTGTCTCAAATACTTTTTCATTTTCTTTTTCTTTTTCTCTTTATGGTATAGTCTAAGTAGTTGATTCTCCTCCTTAGACTCCTGTGTACTGGGATTGCTGATGTTCTTACCATGCTCTACTTTCATATTTCTTCCCTTTGCTCTCTGGTAACATGTTTTTATTTTATTACCATGTATTAGTTTTGGCAGAATTAATAGTTAGCATTTTTTCTCTCTAAATCTTCAGTTTGCTCATAAGTCAGATTTATTTAGGAAACGATGGAGACATTTTTAACTTCTTTGCTATACTGTTGTTACTTAAACCTAATCTTGGGTTTAATTCTAG
Seq C2 exon
AATTGGAAAAGCAACTACAAACCAAAGATTTAGCACCAGAGCAGGATTTTTTGACAAGACACACCTTCATGGAGACACAGCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063108:ENSMUST00000159569:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.626 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(94.7=100)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGCTGTGGATTTCTCTGA
R:
CCTGCTGTGTCTCCATGAAGG
Band lengths:
191-2184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types