RnoINT0167909 @ rn6
Intron Retention
Gene
ENSRNOG00000025937 | Zfp26
Description
zinc finger protein 26 [Source:RGD Symbol;Acc:1565847]
Coordinates
chr8:21455082-21457256:-
Coord C1 exon
chr8:21457148-21457256
Coord A exon
chr8:21455168-21457147
Coord C2 exon
chr8:21455082-21455167
Length
1980 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AATCTTGGGTTTAATTCCAGAAT
3' ss Score
4.61
Exon sequences
Seq C1 exon
GATGAGGCTGTGGATTGCGCTCAGGAAGAGTGGACCCTAAAGGATCCGACTCAGAGCAGCAGACCTGGTGATGTGGCAGTGGAGGACCACACAAACTTGGCCACTGCAG
Seq A exon
GTAAGTTGGTAGTCATTCTCATACGATGCTTCGTGTGGAGCAGGCACATACTCTGTACTTAGTGTGTTTAGAAACTTTGTCCAATCCAAGGAGATAGCAATGATAGCAGTTTCTCTTCTAATGTTTACACTAACATGCTAGTTTAATGGGGGAGGGGTGTACATCAAACTTTAGTACCTCCTATGTGGTGTATATGCTTCATTACTGAGCTTCACGTCTGGCACACTGTGGGGGTGGGTGGTTTGGGTTTTTTATTTTTATTTTTATTTTTATTTTTTATTTTTTATTTTATTTATTTATTTTTGAGATTTAAGGTGATGGTAGTGCACCCCTTTAATTTCAGTCTTGGGAGGCAGAGACAGGTGGAGGTCTGTGATTTCAAGGCTAGCTTGATCTTACATAGTTCCAGGACAATGAAGCTCTACTCAGAGAAACCCTATCTCAAAAAGAAAAGCAAACAGAAGGTTTATTGGATTAATTGTCTTTTTGTGTATGAGTGCATATATGCCAACAGCATATGTGGATATCAGAGAACAGCTTACTGGGAGTCAGTTCTCTGTGCCTACCTTGTGTTTTGAGGAAGGGCCATTCTCATTATTTTTGCCACTGTACTTCTATCCAATTCACCTATTTCCGCCTCTCATCTCCCTGTATGAATGCTGGGGCTAGAATTACAGATGGGTGCCATTGCATTTGATTTTTTAATACTTAATGTCCTAGTTTGCTTTCTGTTTGTTTGCTGTGATAAAACACTGAGTAAATAAGCAACTTGGGGAGGAAAAGGTTTCTTTGGCTCACAGGGTGTCCTCCATCCAGGAAGGCCAAGGCAGGAACCTGAAACAAAAACCACGCTTACTCCCTTAGCTTGCTCAGCCACCTTTGTTCAGATGTGGCAGAAGGTCTGCATCAGTTAACAGTCCAATAACAGTCTCCCCACGGGCCAGACTGAGGGAGGCTATTCCGTTGAGGTTCCTTCTCCCTCAAATGTGGGTTCTGCTGATTGAACCCAGGTTATCAGTGTTATATGGAAAGCTTGTGTACCTGATGAGCTATCTTGATGGCCCACTGTGGTGGTCCTTAAAGTGTGCATTACCTACTTCTGTGGAAATGTGTGTTCTTGTCTTTACCTTTGACAAATGGATGAGCACTTTCTAGTTAGTATTCCACTTTATGACTATATCTGAATTTGATGAACTATAATATTCGTAAGTTAATGGTTTATTTCATTCCTTAGCAAATATTGCAGTGATTGATTTTGTCAGAAATGATAATATGAAGTTGACTAATATTTTAGTGCTCAGAGATCCTTGGGGTCATGGGATTAGAGCTTTGTCTTTTTAGTCCTTTTTGAAATAATTGCTGTTCTTATTAGAATTATGGACCAAAACCCAGGTTTGATTGTGCATGCCTGTAATTTCAGTAGGCTTGCAAGTTTTAGGGTCTAGCCTGGATTACAAGAAACCCTGTATTGAAAAGAATATGTATTATAGACCTGAATCATAGAAAAGTTTGTCATTTGTTCTATTAATGCAACTTTGTCTGCATAAAGGATATCAGACACTTATCAAGCCCCTTGCTTTGACTTGCTTGAAAGAATTGGGGACCACACAGAAGGTAGTTCCCCAAGGTGAAGGTTTATGAAGAACAACATTCACCAATGATATACATCATCGATTCCTTTAATATTTTTCTATGGTATACTTTAAATAGTTGATTCTCCTGCCTTAGATTGATGTGTGCTGGGATTGCTGATGCTCACACCGTGCTGTACTATTATGATATTTCTTGCCTTTTCTCTCTGGTACCATGTTTTTATTTTATTACCATGTATTGGTTTTGGCAGAATTAGTAGTTTGCATTTTTTTCTCTAAATCTTCAGTTTGCTCATGAGCCAGGCTTATTTATAAAAGCATGGAGACATTTTAAACTTCTTTGCTACACTGTTCTATTGCTTAAACCTAATCTTGGGTTTAATTCCAG
Seq C2 exon
AATTGGAAAAGCAACTACAAACCAAAGATTCAGCACCAGAGCAGGATTTTCTGGCGAGACACACCTTCATGGAGACACAGCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025937:ENSRNOT00000038084:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=NA C2=0.517
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGGCTGTGGATTGCGC
R:
CCTGCTGTGTCTCCATGAAGG
Band lengths:
193-2173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]