HsaINT0187652 @ hg38
Intron Retention
Gene
ENSG00000198028 | ZNF560
Description
zinc finger protein 560 [Source:HGNC Symbol;Acc:HGNC:26484]
Coordinates
chr19:9471296-9473259:-
Coord C1 exon
chr19:9473179-9473259
Coord A exon
chr19:9471379-9473178
Coord C2 exon
chr19:9471296-9471378
Length
1800 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AGTTTATGTTTTTGTTTCAGACT
3' ss Score
8.51
Exon sequences
Seq C1 exon
GATTTCAGCTCTTTAAACCCAGTGTCATCTCTTGGTTGGAAGAAGAAGAGTTGAGAACCTTGCAGCAAGGAGTTCTCCAAG
Seq A exon
GTGAGTATTTGTGAAGAACAACCTTGGTCAGTGAGAAGTTCAGTATGTTTAGAAGCTGTGTTAGTCTGTTCTTGTGTTGCAAGAAAGAAATACCTGAGACTGGGTGATTTATTAAGAAAATAGGTTTATTTTGGCTCACGATTCTGCAGGCTCTACAGAAAGCATGGTTCTGACATCTGCTTCAGGTGAGAGCCTCAGAAACCTTACAATCATGGCAGAAGGCAAAGGAGGAGCAGACAAATTACATGATGAGAAAGGGAGTAAAAGAGAAGTTGGGGGTGGTGTCATAGTGTTTTAAACCAGCAGTCCCCAGCCTTTTTGGCATCAGGGACCAGTTTCATGGAAGACAATTTTTCCACAGACCAGGTCTCAGGGATATTGTTTCAGGATGATTCAGGTGCATTACATTTATTGTGCACTTTATTTCTACTATTATTACATTGTAATATATAAGGAAATAATTATACAACTCTACCATAACTCTACTGTAATGAAATAATTATACAATTCTACCATAATGTAGAATCAATGGGAACCCTGAGGTTGTTTTCCTGTAACCAGATGGTCCCATTTGGGGATCTGGGGGTGATGGGAGACAGTGACAGATCATCAGGCATTAGATTCTCAAAAGGAGCGCGCAAACTAAATCCTTCGCATGCACAGTTCATGATAGATTTTGCTCTTTTATGAGAATCAAGTGCTGCCGCTGATCTGACAAGAGGCGGAGCTCAGGAGGCAATTAGGATGGAGAGCAGCTATAAATACAAATGAAGCTTCACTTGCTCTCCTGCCACTCACCTCCTGTGCTGTGGCCTGGTTCTGGTCCATGGCTCCGGAGTTGGAGACTCCTGTTTTAAACTACCAGGTCTCACATGAATTCAGAACAAGAACTCACTTATTACTCCGAGTATGTCACTAAGCCATTCATGAAGGACCCACCCCCATGATCCAAACATCTCCCACCAGGCCCCACCTCCAGTATTTGGCGTTGCATTTCCATATGAGATTTGGAGGGAACTAACATCCAAACCATCAGAAACATAATGAGGGAACTTTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTCCCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCACCGCAACCTATGCCTCCCAGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCTGCCAACATGCCCGGCTAATTTTTTGTATTTTTAGTAGAGATGGTGTTCCACCGTGTTAGCCAGGATGGTCTTCATCTCCTAACCTTGTGATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCACCACACCCAGCCCTCTGAGGGAACTTTTTAAGATGCACCTTCTCTCACAAGGTTAAGGCCATTTATCTCAGAAGTTAGAAAATATTCAATTTTTGATACTCTTTAAATTTCCATCTACTCCAACTTTCTATGATCTTATGAAACTATATATTTTGTTTTTCAAGTTCTTTGCTTTGAAATATGGCTTTGGCCCAGATCTTTCCTACTTTTCTGATAACATTCTTTCTGTTTAACATTAGTTTTAAATCTAAATGAGTCAATTTGTAGCAAATTAGCTAAAATTTTGACCCTTTAATCTCATTATTGCCAATTTTTTGACACAGTCTAAATGTTCAATTTAGCTTTCTTTTTTCTTATGTTTATTTTAAAAACAAATATGAATGAGGCCTATAATTTTTAACTCTTTCATTTTACCTTTTTTTTTAAAAAAAAAAAAAACCTCAGTTTATGTTTTTGTTTCAG
Seq C2 exon
ACTGGGCAATAAAACATCAAACCAGTGTTTCAGCACTGCAGCAGGAGTTTTGGAAAATACAAACTTCTAATGGGATACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198028:ENST00000301480:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains