MmuINT0179978 @ mm10
Intron Retention
Gene
ENSMUSG00000058192 | Zfp846
Description
zinc finger protein 846 [Source:MGI Symbol;Acc:MGI:1924012]
Coordinates
chr9:20590813-20591421:+
Coord C1 exon
chr9:20590813-20590884
Coord A exon
chr9:20590885-20591338
Coord C2 exon
chr9:20591339-20591421
Length
454 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTTTTTCTGTTTATCTTCAGAAT
3' ss Score
10.35
Exon sequences
Seq C1 exon
GATGTGAGGTCATCAAACCCAGTCTGATCTCCTGGTTGGAAGAAGAGGATTTGCACAGAGAAGATCTCCAAG
Seq A exon
GTGAGTGAGTGTGAAGAGTATGTTTGCAATTCGAACGTGAAATCTTTTTAATTTCTTAATGGCTCTAAGTGTGAGCCATGTACTGGGAGAGAAAGGAAGCCCTCTATTCTTACTTTTTGCCTTCTCAGGTTTTCATGTAATTTTGCAAAATGACCTATTAGGTTTCATGGTTTTTGTCTGTTATATATTTGATCAGATCTTGCTACCTTGCAGCCCTAACAATATGATTTTCATTTACCATGAGTTTTAATTTTCAAAGAGTCAGTTTGAAATAAAACATTGAAAACGCACATCCTTAGTGCAGTCAACTTATTGACCTTGTCAAAATGATCACACTTTACTTCCTTTAGAACGAGGTTCAGTGGGACAATCAAAAAAGCCCATGGTTGCTGACTTTGTAACTGACCATTTATTTTTCTCCAACCCTTAATTTTGTTTTTCTGTTTATCTTCAG
Seq C2 exon
AATGGGAAATGCCACTTGGCACCCAAGAGTCACCATTGCATCAGGATTTTTTGAGGGGACAGACTTCCAGTGGAATACAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058192:ENSMUST00000140668:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.321
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types