RnoINT0168709 @ rn6
Intron Retention
Gene
ENSRNOG00000020356 | Zfp846
Description
zinc finger protein 846 [Source:RGD Symbol;Acc:1564241]
Coordinates
chr8:21614395-21614992:+
Coord C1 exon
chr8:21614395-21614466
Coord A exon
chr8:21614467-21614909
Coord C2 exon
chr8:21614910-21614992
Length
443 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCTTTTCTGTTTATCTTCAGAAT
3' ss Score
10.13
Exon sequences
Seq C1 exon
GATGTGAGGTCATCAAACCCAGTCTGATCTCCTGGTTGGAGGAAGAGGATTTGCACAGAGAAGATCTCCAAG
Seq A exon
GTGAGTGTTTGTGGAGAATATGTTTGCAATTGGTATATGGACTCTTTGATGGCTCTTAAGTGCGGACCATGCACTGGAGGAGGAAGGAAATCCTCTGCTCTTACTCTTTGCCTTCTCAGGTTTCCGTGTAATTTTGCAGAATGGCCTATTGGGTTTTATGGTTATTGTCTGTTATGTATTTGTTTGTATCTTTGCTACCTTGCTGCCCTAATACGATTTTCATTCACTATGAGTTTTAATTTTCAAAGAGTCAGTTTGAAATAAAACACTGAAAACCACATCCTTAGTGTAGTCAATTTATTGACCTTGTCAAAATGGTCACACTTTACTTTCTTCCTAATGAGCTTCAGAAGAGCGATCAAAAAAAGCCCATGGTTGTTAACTTTGTAACTGACCATTTATTTTTCTCCAACCCTTAATTTTGCTTTTCTGTTTATCTTCAG
Seq C2 exon
AATGGGAAATGCCACTTGGCACCCAAGAGTCAACATTGCATCAGGATTTTTTGAGGGGACAGACTTCCAGTGGAGTACAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020356:ENSRNOT00000068461:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]