MmuEX0053127 @ mm10
Exon Skipping
Gene
ENSMUSG00000063108 | Zfp26
Description
zinc finger protein 26 [Source:MGI Symbol;Acc:MGI:99173]
Coordinates
chr9:20441329-20444367:-
Coord C1 exon
chr9:20444259-20444367
Coord A exon
chr9:20442180-20442265
Coord C2 exon
chr9:20441329-20441455
Length
86 bp
Sequences
Splice sites
3' ss Seq
AATCTTGGGTTTAATTCTAGAAT
3' ss Score
5.2
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GATGAGGCTGTGGATTTCTCTGAAGAGGAGTGGACTACAAAGGCTCCAACTCAGAACAGCAAGCCTGGTGCTGTGGCGGTGGAGGAGCACACAAGCCTGGCCGCTGTAG
Seq A exon
AATTGGAAAAGCAACTACAAACCAAAGATTTAGCACCAGAGCAGGATTTTTTGACAAGACACACCTTCATGGAGACACAGCAGGTG
Seq C2 exon
GATGCAGTGACCTTTGAAGATGTGGCTGTGGACTTTACCCAGGAAGAGTGGACCTCACTGGACCCAGTTCAGAGGAACCTCTACAGAGATGTGATGCTGGAGAACTACCAGAACCTGGCCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063108_MULTIEX1-5/8=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.626 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(94.7=100)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCAGAACAGCAAGCCTGG
R:
CTGGTAGTTCTCCAGCATCACA
Band lengths:
173-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types