RnoEX6034714 @ rn6
Exon Skipping
Gene
ENSRNOG00000025937 | Zfp26
Description
zinc finger protein 26 [Source:RGD Symbol;Acc:1565847]
Coordinates
chr8:21454204-21457256:-
Coord C1 exon
chr8:21457148-21457256
Coord A exon
chr8:21455082-21455167
Coord C2 exon
chr8:21454204-21454330
Length
86 bp
Sequences
Splice sites
3' ss Seq
AATCTTGGGTTTAATTCCAGAAT
3' ss Score
4.61
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GATGAGGCTGTGGATTGCGCTCAGGAAGAGTGGACCCTAAAGGATCCGACTCAGAGCAGCAGACCTGGTGATGTGGCAGTGGAGGACCACACAAACTTGGCCACTGCAG
Seq A exon
AATTGGAAAAGCAACTACAAACCAAAGATTCAGCACCAGAGCAGGATTTTCTGGCGAGACACACCTTCATGGAGACACAGCAGGTG
Seq C2 exon
GATGCAGTGACCTTTGAAGATGTGGCTGTGGACTTTACCCAGGAAGAATGGACTTCCCTGGATCCAATTCAGAGAACCCTCTACCGAGAGGTGATGCTGGAGAACTACCAGAACCTGGCCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025937-'3-7,'3-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=0.517 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCGACTCAGAGCAGCAGA
R:
CCAGCATCACCTCTCGGTAGA
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]