MmuEX0053658 @ mm9
Exon Skipping
Gene
ENSMUSG00000058192 | Zfp846
Description
zinc finger protein 846 [Source:MGI Symbol;Acc:MGI:1924012]
Coordinates
chr9:20395257-20399636:+
Coord C1 exon
chr9:20395257-20395328
Coord A exon
chr9:20395783-20395865
Coord C2 exon
chr9:20397605-20399636
Length
83 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTGTTTATCTTCAGAAT
3' ss Score
10.35
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GATGTGAGGTCATCAAACCCAGTCTGATCTCCTGGTTGGAAGAAGAGGATTTGCACAGAGAAGATCTCCAAG
Seq A exon
AATGGGAAATGCCACTTGGCACCCAAGAGTCACCATTGCATCAGGATTTTTTGAGGGGACAGACTTCCAGTGGAATACAAACA
Seq C2 exon
GGCAGAAGCCACAGTGCACACGAACTCTGCTACTACACACAATGTGGGGAAATTTTCAGTGAGCACTCATATTTCAAGACCCATGTGAAAACTCATAGTGCATGGAACACTGGACATCTCACCCACTCAGATCATGATGTGTCTGCTCAAGTGCACACCATAAAAACGTACCCATGTAAGATTTGTGGGAAAGCCTTTGGACGATCTTCAAATCTCAATAGACACCTGCGAAGCCACACTGGAGAAAAACCCTATGAATGTAAGGAGTGTGGGAAAGCCTTCACTACCTACTCAAGGCTAGTGGAACACTTTAGAACTCACACTGGAGAGAAACCATATAAATGTAAGGATTGTGGAAAAGCCTTTGCTAAGCGGTCAGGCCTTATAACTCATATATCAACCCATGCTTCAGAGAAACCCTTTGCATGTAAAGAGTGTGGAAAAGCCTTTGCTTCATCCCCACGCCTTAGTCAGCATATAAGAATTCACAGTGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058192_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.080 A=0.469 C2=0.023
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF0013017=C1_1=WD(100=11.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=6.2),PF0062824=PHD=WD(100=10.8),PF134651=zf-H2C2_2=WD(100=5.9),PF0128613=XPA_N=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF0128613=XPA_N=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF0013017=C1_1=WD(100=11.9),PF134651=zf-H2C2_2=WD(100=5.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGTCTGATCTCCTGGTT
R:
AGTGGGTGAGATGTCCAGTGT
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types