BtaEX6003013 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr1:121432088-121433879:-
Coord C1 exon
chr1:121433799-121433879
Coord A exon
chr1:121432887-121432969
Coord C2 exon
chr1:121432088-121432405
Length
83 bp
Sequences
Splice sites
3' ss Seq
ATTATTCTCTTTTCCTTTAGAAT
3' ss Score
10.16
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GATATCAAGCAATCAAACCCACTTTAATCTCTTGGTTGGAACAAGACGTATTAAAAACTGTGGAGAGAGGAATCCTCCAAG
Seq A exon
AATGGGAAATGCAACTTATATCCAATGACTTGGGAATTCAGCAGGATATTTTGCCAGAAAAAACATCAAATAGGGTACAAATG
Seq C2 exon
ACACAAAGCCACAATGGACAGGAACTGTATGACTGTGAGCACAGCTGGAAAGACTTCAGTGACAGTGACTACTTGTACCGTAGTACACAAAGGAGAACTGAAAATGGAGGCAATTCTCATGAATATAGTCATTATGGAAAAAGCTTCCTTATTCTGCACAATGAATCCTTTACTGGAGAAAAATGTTCCATGTTTAATCAGTGTGGAAAAGCCATCAGGCTGACTCCAAATACTGTGTACTGGCAATCCAGCATACAAGAGAAAGCCTTAGAACACAGAGATTGTGAGCAATCCTTTGCTAATGGGTCTTATATACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025146-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.104
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCACTTTAATCTCTTGGTTGGA
R:
TGCCTCCATTTTCAGTTCTCCT
Band lengths:
177-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]