Special

HsaEX0073287 @ hg38

Exon Skipping

Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:HGNC:13059]
Coordinates
chr19:9412598-9417908:-
Coord C1 exon
chr19:9417828-9417908
Coord A exon
chr19:9415654-9415742
Coord C2 exon
chr19:9412598-9414720
Length
89 bp
Sequences
Splice sites
3' ss Seq
ACATTTCTTTTTCTCTTCAGCTT
3' ss Score
9.74
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GATATCAGCTCTTCAAACCCAGTCTGATCTCTTGGCTGGAACAAGAAGAGTCTAGGACAGTGCAGAGAGGTGATTTCCAAG
Seq A exon
CTTCAGAATGGAAAGTGCAACTTAAAACCAAAGAGTTAGCCCTTCAGCAGGATGTTTTGGGGGAGCCAACCTCCAGTGGGATTCAAATG
Seq C2 exon
ATAGGAAGCCACAACGGAGGGGAGGTCAGTGATGTTAAGCAATGTGGAGATGTCTCCAGTGAACACTCATGCCTTAAGACACATGTGAGAACTCAAAATAGTGAGAACACATTTGAGTGTTATCTGTATGGAGTAGACTTCCTTACTCTGCACAAGAAAACCTCTACTGGAGAGCAACGTTCTGTATTTAGTCAGTGTGGAAAAGCCTTCAGCCTGAACCCAGATGTTGTTTGCCAGAGAACGTGCACAGGAGAGAAAGCTTTTGATTGCAGTGACTCTGGGAAATCCTTCATTAATCATTCACACCTTCAGGGACATTTAAGAACTCACAATGGAGAAAGTCTCCATGAATGGAAGGAATGTGGGAGAGGCTTTATTCACTCCACAGACCTTGCTGTGCGTATACAAACTCACAGGTCAGAAAAACCCTACAAATGTAAGGAATGTGGAAAAGGATTTAGATATTCTGCATACCTTAATATTCACATGGGAACCCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652-'20-22,'20-20,22-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

Show structural model
Features
Disorder rate (Iupred):
  C1=0.031 A=0.167 C2=0.067
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAGTGCAGAGAGGTGAT
R:
TGCAGAGTAAGGAAGTCTACTCCA
Band lengths:
180-269
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development