MmuEX6064157 @ mm10
Exon Skipping
Gene
ENSMUSG00000060510 | Zfp266
Description
zinc finger protein 266 [Source:MGI Symbol;Acc:MGI:1924769]
Coordinates
chr9:20495068-20502121:-
Coord C1 exon
chr9:20502041-20502121
Coord A exon
chr9:20500874-20500953
Coord C2 exon
chr9:20495068-20500477
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTATTTAACTTAAGAAT
3' ss Score
4.86
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GATGTCAGTTATTCATTCCTAGTCTGACCCCCTGGTTAAAACAAGAAGAGTCCGAGGTGGCGGAAAGTGCTGTTCCTCAAC
Seq A exon
AATTGGAACTACAACCTACAATTGACGATTCAGAGCTTGAGAATTATTTTAGGATGCAAAGTTCCAGTGCAACAGAAATG
Seq C2 exon
GTGGGTGACTCATCTCTTCACGAGCAGTCAGGAAACCACAATGAAGAGGACCTATGTGACTCTAAGCCATGTGGGAATGTGTTGGGTGAACAATTATGCCTTAACACAGAGGTGAGCATGCAAAGTCAAGGATACAGTTCTGAGTGTAACTGGTATGGGAAAGACATTCTTTCTTTGCTCAAGGAAACCTCTACTGGACAGACCGTTTCTGAGCTTAATCAGTGTGGAAAACTCTTCAGTCTGACTCCAAACATCATGTACCCGAGCACTAGCACAAATGAGAAGCCCTTTGAATGCACAGACTGTGAGACAGCCTTTTTTAATCAGTCTTACTTTCAGCCAGATATGAGGCCTCACAATGGAGGAGAACCCTTTGACTGGAGTAAATACGGGAATGGTTTTATTCATCCTACAGGCCTTGCTATGCATCTTCCAATTCTCAATGCAAGAAACCCCTACAAATTTGAGGAATGTGGAAAGGACTTTCAGTATTTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060510-'17-18,'17-17,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.444 C2=0.051
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=4.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAAGAGTCCGAGGTGGC
R:
ACTTTGCATGCTCACCTCTGT
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types