HsaEX0073287 @ hg19
Exon Skipping
Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:13059]
Coordinates
chr19:9523272-9528584:-
Coord C1 exon
chr19:9528504-9528584
Coord A exon
chr19:9526330-9526418
Coord C2 exon
chr19:9523272-9525396
Length
89 bp
Sequences
Splice sites
3' ss Seq
ACATTTCTTTTTCTCTTCAGCTT
3' ss Score
9.74
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GATATCAGCTCTTCAAACCCAGTCTGATCTCTTGGCTGGAACAAGAAGAGTCTAGGACAGTGCAGAGAGGTGATTTCCAAG
Seq A exon
CTTCAGAATGGAAAGTGCAACTTAAAACCAAAGAGTTAGCCCTTCAGCAGGATGTTTTGGGGGAGCCAACCTCCAGTGGGATTCAAATG
Seq C2 exon
ATAGGAAGCCACAACGGAGGGGAGGTCAGTGATGTTAAGCAATGTGGAGATGTCTCCAGTGAACACTCATGCCTTAAGACACATGTGAGAACTCAAAATAGTGAGAACACATTTGAGTGTTATCTGTATGGAGTAGACTTCCTTACTCTGCACAAGAAAACCTCTACTGGAGAGCAACGTTCTGTATTTAGTCAGTGTGGAAAAGCCTTCAGCCTGAACCCAGATGTTGTTTGCCAGAGAACGTGCACAGGAGAGAAAGCTTTTGATTGCAGTGACTCTGGGAAATCCTTCATTAATCATTCACACCTTCAGGGACATTTAAGAACTCACAATGGAGAAAGTCTCCATGAATGGAAGGAATGTGGGAGAGGCTTTATTCACTCCACAGACCTTGCTGTGCGTATACAAACTCACAGGTCAGAAAAACCCTACAAATGTAAGGAATGTGGAAAAGGATTTAGATATTCTGCATACCTTAATATTCACATGGGAACCCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.133 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=4.4),PF0013017=C1_1=WD(100=12.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF0013017=C1_1=WD(100=10.6),PF134651=zf-H2C2_2=WD(100=5.4)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAGTGCAGAGAGGTGAT
R:
TGCAGAGTAAGGAAGTCTACTCCA
Band lengths:
180-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)