MmuEX0053452 @ mm9
Exon Skipping
Gene
ENSMUSG00000045519 | Zfp560
Description
zinc finger protein 560 [Source:MGI Symbol;Acc:MGI:1915280]
Coordinates
chr9:20149580-20155056:-
Coord C1 exon
chr9:20154976-20155056
Coord A exon
chr9:20154025-20154107
Coord C2 exon
chr9:20149580-20153603
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTATTGTTATTTAACTTCAGACT
3' ss Score
6.43
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATGTCAGCTCATCAAATCTAGATACAGCTTTTGCTTGGAGGCTGAAGAGTTGAGAGTAGTCAAGAAAAGAGTTCACCAAG
Seq A exon
ACTGGGCTATACAACTTAACCCCAGAGGGACAATGTTTCAGCGGGATATTTTTCAGTTAAAAATGTCAAATGAGATACAACTG
Seq C2 exon
CCAAATAGCCACAATGGAAAGGAGCTCTGTGACATTAAGCCACCTGGAGAAATCATCAAAGAGCCTCCATGCAGTCTGACATACATAGGTATTGAAAACACAGGGAACATTTATGATTGTGTTCAGTATGGACAGCTCTTTCCTGTTTGTCCTAAGGAGACTTCCTCTGCAGACACTGGTCCTGGATTACGCCAGTATGGAAAAGACTTCAGTATGATTGCAAGTACAGCTTACCAGACAACATGTGTACAAAGCAAATTCATTGAATCCAGTGAATTTCAGCAAGTCTTTGATAGTCAGTCATCCCTTCAGAGGCCTGGGGGAAGTCACAGTGAAGACAAACTCTCTGAGTCGGTGCAGTGTGGTGATACTTTTAGTCCAGCCTTGAGTCATGCTGAGAGTGCTCAAACATGCACTGGAAAAAAATCCTATGAATGTAAGGAATGTGGGAAGAGTTTTAAATATTCTGCCAACCTTAATATTCATATGCGTACTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045519-'11-6,'11-5,12-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.0),PF097235=Zn-ribbon_8=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGCTGAAGAGTTGAGAGT
R:
GAGCTGTCCATACTGAACACA
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types