HsaEX6092707 @ hg19

Exon Skipping

Gene

ENSG00000198028 | ZNF560

Description

zinc finger protein 560 [Source:HGNC Symbol;Acc:26484]

Coordinates

chr19:9577009-9580386:-

Coord C1 exon

chr19:9580306-9580386

Coord A exon

chr19:9579781-9579863

Coord C2 exon

chr19:9577009-9579010

Length

83 bp

Sequences

Splice sites

3' ss Seq

ATTTTTCTCTTTTATTTCAGAAT

3' ss Score

10.48

5' ss Seq

TTGGTAAGA

5' ss Score

8.85

Exon sequences

Seq C1 exon

GTTACCAGCTCTTCAAACCCAGTCTGATCTCTTGGCTGGAGGAAGAGGAAGAGTTGAGCACACTGCCAAGAGTTCTCCAAG

Seq A exon

AATGGAAAATGTGCCTGAAAACCAAAGGGCCAGCCCTTTGGCAAGATAATTTTTGTTTAAAAACATTAAATGGGATACAGTTG

Seq C2 exon

GCAAGAAACCAAAATGGAGAGGAACTCTATGACTGTAAGCAATGTGAAGATGTCTTCTGTAAACATCCATGCCTTAAGACCAACATGAGTACTCAAAATAGAGGCAACACGTCTGAATGTATTCAGTATGCAAAAGACCTCCTTTCTCTATACAATAAAACCTCTACCATAAGGAAAGTTTCTGTGTTCAGTAAGCATGGAAAATCTTTCCGCCTGATTTTAAATGTTCAGGTCCAGAGAAAGTGTACACAAGATAAATCCTTTGAAGGCACTGACTATGGGAAAGCCTTCATTTATCAGTCATACCTTGAAGCACACAGGAAAACTCAGAGTGGAGAAAAACTCAATGAATGGAAGCAATGTGGGGAAGCATTTACTCACTCCACAAGCCATGCTGTAAATGTTGAAACACACATTATTAAAAACCCCTATGAATGTAAGGAATGTGGAAAAGATTTTAGATACCCTACCCACCTTAATAATCACATGCAAACCCACAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000198028-'7-9,'7-8,8-9=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.009

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NO

C2:

PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF139121=zf-C2H2_6=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.1)

Main Inclusion Isoform:

ENSP00000301480