RnoEX0101517 @ rn6
Exon Skipping
Gene
ENSRNOG00000048394 | Zfp560
Description
zinc finger protein 560 [Source:RGD Symbol;Acc:2323078]
Coordinates
chr8:21380504-21386925:-
Coord C1 exon
chr8:21386845-21386925
Coord A exon
chr8:21384053-21384135
Coord C2 exon
chr8:21380504-21383633
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTTATTTAACTTCAGAAC
3' ss Score
7.33
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATGTCAGCTCATCAAATCCAGATCCAGCTCTTGTTTGGAGGCTGAAGAGTTGAGAGTTGTCGAAAGAAGAGTTCAACAAG
Seq A exon
AACAGGCTATGCAACTTAACACCAGAGGGACAATGTTTCAGCAGGATATTTTTCAGTTAAAAATATCAGATGAGATACAACTG
Seq C2 exon
TCAAATAGCCACAATGGAAAGGAGCTCTGTGACATTAAGCCACCTGGAGAAATCATCAAAGACACTTCATGCAGTCGGACACACATAGGTATTGAAAGCACAGCGAGCATTTATGATGGTGGTCAGTATGAACAAGTCTTTCCTACCCTGCCTAAGGAGACCTCCTCTGCAGACAGCAGTCGTGAATTAGAACAGTATGGAAAAGACTTCAGTATGACTGCAAGTACTGCTTACCAGACAACATGTGTGCAAAACAACTTCCTTGAATCCAGTGAATTTCAGCAGTCATCCCTTCAGAGGCCTGGGAAAAGTCACAATGAAGACAAACTCTTTAACTGGGTACAGTGTGGTGATACTTTTAGGCCAGTCATGAGTCATGCTGAGAATGCTCAAATATATACTGGGAAAAAATCGTATGAATGTAAGGAATGTGGGAAAAGTTTTAAATATTCTGCCAACCTTAATATTCATATGCGTTCTCACACTGGAGAGAAACCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048394_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.040 C2=0.065
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF127602=Zn_Tnp_IS1595=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGCTCTTGTTTGGAGGC
R:
GCTCGCTGTGCTTTCAATACC
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]