BtaEX0041181 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039523 | ZNF266
Description
Bos taurus zinc finger protein 266 (ZNF266), mRNA. [Source:RefSeq mRNA;Acc:NM_001104968]
Coordinates
chr7:15439187-15444812:+
Coord C1 exon
chr7:15439187-15439267
Coord A exon
chr7:15439997-15440079
Coord C2 exon
chr7:15444712-15444812
Length
83 bp
Sequences
Splice sites
3' ss Seq
AATTTGTAATTCTCTTTTAGAGT
3' ss Score
7.57
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GATATCAGGTGTTCAAACCCACTCTGATCTCTTGGTTGGAAGAAGAAGAGTTGAGTACTGTGGAGAGAGGAGTCCTCCAAG
Seq A exon
AGTGGGGAATGCAACTTAAAGCCAAAGACTCAAGAATTGGGCAGAATATTTTGGGGAAAAAAATGTCAAATGGGATAGAAAAG
Seq C2 exon
GCAAGAGGCCATAATGTACAGGAACTCTATGACAGTGAGCAATGTGGGAAAGACCTCAGTGACCACTCATGCCCTAGGACATACAGGAGTACTCAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039523-'7-7,'7-6,8-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSBTAT00000054432fB7982
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTGTTCAAACCCACTCTG
R:
ACTCCTGTATGTCCTAGGGCA
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development