HsaEX6092706 @ hg19
Exon Skipping
Gene
ENSG00000198028 | ZNF560
Description
zinc finger protein 560 [Source:HGNC Symbol;Acc:26484]
Coordinates
chr19:9579781-9581194:-
Coord C1 exon
chr19:9581068-9581194
Coord A exon
chr19:9580306-9580386
Coord C2 exon
chr19:9579781-9579863
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTATCTTTCCCTGTGTACAGGTT
3' ss Score
9.37
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GACCTGGTAACCTTTGACAGTGTGGCTGTGGAGTTCACCCAGGAAGAGTGGACTTTACTGGACCCAGCTCAGAGAAACCTGTACAGTGATGTGATGCTGGAGAACTACAAGAACCTGTCCTCAGTAG
Seq A exon
GTTACCAGCTCTTCAAACCCAGTCTGATCTCTTGGCTGGAGGAAGAGGAAGAGTTGAGCACACTGCCAAGAGTTCTCCAAG
Seq C2 exon
AATGGAAAATGTGCCTGAAAACCAAAGGGCCAGCCCTTTGGCAAGATAATTTTTGTTTAAAAACATTAAATGGGATACAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198028-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTGGCTGTGGAGTTCAC
R:
AAACAAAAATTATCTTGCCAAAGGG
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)