MmuEX6064147 @ mm10
Exon Skipping
Gene
ENSMUSG00000045519 | Zfp560
Description
zinc finger protein 560 [Source:MGI Symbol;Acc:MGI:1915280]
Coordinates
chr9:20349581-20351964:-
Coord C1 exon
chr9:20351838-20351964
Coord A exon
chr9:20350532-20350612
Coord C2 exon
chr9:20349581-20349663
Length
81 bp
Sequences
Splice sites
3' ss Seq
GCATCTTTCCTCATGTGTAGGAT
3' ss Score
9.14
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAGTCAGTGACCTTTGAGGATGTGGCTGTAGACTTCACCCAGGAGGAATGGATTTTATTGGACACAAAACAACGGAACCTTTACAGAGAGGTGATGCTGGAGAACTACCAGAACCTGGCTACATTAG
Seq A exon
GATGTCAGCTCATCAAATCTAGATACAGCTTTTGCTTGGAGGCTGAAGAGTTGAGAGTAGTCAAGAAAAGAGTTCACCAAG
Seq C2 exon
ACTGGGCTATACAACTTAACCCCAGAGGGACAATGTTTCAGCGGGATATTTTTCAGTTAAAAATGTCAAATGAGATACAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045519-'11-10,'11-9,12-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTTTGAGGATGTGGCT
R:
ATCCCGCTGAAACATTGTCCC
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types