HsaEX6092706 @ hg38

Exon Skipping

Gene

ENSG00000198028 | ZNF560

Description

zinc finger protein 560 [Source:HGNC Symbol;Acc:HGNC:26484]

Coordinates

chr19:9466507-9470518:-

Coord C1 exon

chr19:9470392-9470518

Coord A exon

chr19:9469630-9469710

Coord C2 exon

chr19:9466507-9468334

Length

81 bp

Sequences

Splice sites

3' ss Seq

GTATCTTTCCCTGTGTACAGGTT

3' ss Score

9.37

5' ss Seq

AAGGTGAGT

5' ss Score

10.47

Exon sequences

Seq C1 exon

GACCTGGTAACCTTTGACAGTGTGGCTGTGGAGTTCACCCAGGAAGAGTGGACTTTACTGGACCCAGCTCAGAGAAACCTGTACAGTGATGTGATGCTGGAGAACTACAAGAACCTGTCCTCAGTAG

Seq A exon

GTTACCAGCTCTTCAAACCCAGTCTGATCTCTTGGCTGGAGGAAGAGGAAGAGTTGAGCACACTGCCAAGAGTTCTCCAAG

Seq C2 exon

GCAAGAAACCAAAATGGAGAGGAACTCTATGACTGTAAGCAATGTGAAGATGTCTTCTGTAAACATCCATGCCTTAAGACCAACATGAGTACTCAAAATAGAGGCAACACGTCTGAATGTATTCAGTATGCAAAAGACCTCCTTTCTCTATACAATAAAACCTCTACCATAAGGAAAGTTTCTGTGTTCAGTAAGCATGGAAAATCTTTCCGCCTGATTTTAAATGTTCAGGTCCAGAGAAAGTGTACACAAGATAAATCCTTTGAAGGCACTGACTATGGGAAAGCCTTCATTTATCAGTCATACCTTGAAGCACACAGGAAAACTCAGAGTGGAGAAAAACTCAATGAATGGAAGCAATGTGGGGAAGCATTTACTCACTCCACAAGCCATGCTGTAAATGTTGAAACACACATTATTAAAAACCCCTATGAATGTAAGGAATGTGGAAAAGATTTTAGATACCCTACCCACCTTAATAATCACATGCAAACCCACAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000198028_MULTIEX1-5/6=4-C2

Average complexity

C3

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.009

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF139121=zf-C2H2_6=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.1)

Main Inclusion Isoform:

ENSP00000301480