HsaEX6092705 @ hg38

Exon Skipping

Gene

ENSG00000198028 | ZNF560

Description

zinc finger protein 560 [Source:HGNC Symbol;Acc:HGNC:26484]

Coordinates

chr19:9466507-9471378:-

Coord C1 exon

chr19:9471296-9471378

Coord A exon

chr19:9470392-9470518

Coord C2 exon

chr19:9466507-9468334

Length

127 bp

Sequences

Splice sites

3' ss Seq

GCATGTGTCTGATGGTTTAGGAC

3' ss Score

6.64

5' ss Seq

TAGGTAAGT

5' ss Score

9.66

Exon sequences

Seq C1 exon

ACTGGGCAATAAAACATCAAACCAGTGTTTCAGCACTGCAGCAGGAGTTTTGGAAAATACAAACTTCTAATGGGATACAAATG

Seq A exon

GACCTGGTAACCTTTGACAGTGTGGCTGTGGAGTTCACCCAGGAAGAGTGGACTTTACTGGACCCAGCTCAGAGAAACCTGTACAGTGATGTGATGCTGGAGAACTACAAGAACCTGTCCTCAGTAG

Seq C2 exon

GCAAGAAACCAAAATGGAGAGGAACTCTATGACTGTAAGCAATGTGAAGATGTCTTCTGTAAACATCCATGCCTTAAGACCAACATGAGTACTCAAAATAGAGGCAACACGTCTGAATGTATTCAGTATGCAAAAGACCTCCTTTCTCTATACAATAAAACCTCTACCATAAGGAAAGTTTCTGTGTTCAGTAAGCATGGAAAATCTTTCCGCCTGATTTTAAATGTTCAGGTCCAGAGAAAGTGTACACAAGATAAATCCTTTGAAGGCACTGACTATGGGAAAGCCTTCATTTATCAGTCATACCTTGAAGCACACAGGAAAACTCAGAGTGGAGAAAAACTCAATGAATGGAAGCAATGTGGGGAAGCATTTACTCACTCCACAAGCCATGCTGTAAATGTTGAAACACACATTATTAAAAACCCCTATGAATGTAAGGAATGTGGAAAAGATTTTAGATACCCTACCCACCTTAATAATCACATGCAAACCCACAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000198028_MULTIEX1-4/6=3-C2

Average complexity

C3

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.009

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=WD(100=95.3)

C2:

PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF139121=zf-C2H2_6=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.1)

Main Inclusion Isoform:

ENSP00000301480