BtaEX0041182 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039523 | ZNF266
Description
Bos taurus zinc finger protein 266 (ZNF266), mRNA. [Source:RefSeq mRNA;Acc:NM_001104968]
Coordinates
chr7:15437847-15439267:+
Coord C1 exon
chr7:15437847-15437935
Coord A exon
chr7:15438437-15438563
Coord C2 exon
chr7:15439187-15439267
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTATATGTATGATGGTTCAGGAC
3' ss Score
5.07
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGTTCTTATTAAGGACTCTTTCTGCCTTCCTGAGGAAAAGATAGAAGCAAACAGGATGGTAACTGAGTGTTTGAGAAATTGTTCTCAG
Seq A exon
GACTCAGTGACCTTTGCTGATGTGGCTGTGAACTTCACCCAGGAAGAGTGGACTTTACTGAACCGCTTTCAGAGAAAGCTGTACAGAGATGTGATGCTGGAGAACTACAAGAACCTGACCACAGCAG
Seq C2 exon
GATATCAGGTGTTCAAACCCACTCTGATCTCTTGGTTGGAAGAAGAAGAGTTGAGTACTGTGGAGAGAGGAGTCCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039523_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTATTAAGGACTCTTTCTGCCT
R:
GAGGACTCCTCTCTCCACAGT
Band lengths:
162-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development