MmuEX6064156 @ mm9
Exon Skipping
Gene
ENSMUSG00000060510 | Zfp266
Description
zinc finger protein 266 [Source:MGI Symbol;Acc:MGI:1924769]
Coordinates
chr9:20306485-20310509:-
Coord C1 exon
chr9:20310421-20310509
Coord A exon
chr9:20309496-20309622
Coord C2 exon
chr9:20306485-20306565
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACGTGTGTGTAATGGTTTAGGAT
3' ss Score
7.28
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GCCTTCTTTCTAGAGAGCCTATCTACGTCTACGAAGCAAACATAGAGGTAGACGGGACGGTGACTGACAACCAGGCAAATTGTTACCAG
Seq A exon
GATTCAGTGACCTTCGATGATGTGGCTGTGGAGTTCACCCCGGATGAGTGGACTTTACTGGACCTGACTCAGAAGAATCTATACCGAGAGGTCATGCTGGAGAACTACGAGAACTTGACTTCAGTAG
Seq C2 exon
GATGTCAGTTATTCATTCCTAGTCTGACCCCCTGGTTAAAACAAGAAGAGTCCGAGGTGGCGGAAAGTGCTGTTCCTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060510-'8-10,'8-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.321
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTTTCTAGAGAGCCTATCT
R:
GTTGAGGAACAGCACTTTCCG
Band lengths:
170-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: