HsaEX0074395 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr19:9688343-9694867:-
Coord C1 exon
chr19:9694779-9694867
Coord A exon
chr19:9693694-9693820
Coord C2 exon
chr19:9688343-9691269
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCATGTGTGTGATGACTTAGGAT
3' ss Score
5.4
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GGTTTTTTCCCAGGGAACCAATCTGCCCTTTTGAAGAAAAGACAAAGATAGGAACGATGGTGGAGGACTACCTGGCAAATTCTTATCAG
Seq A exon
GATTCAGTGACGTTTGATGATGTGGCTGTGGAGTTCACCCCAGAGGAGTGGGCTTTACTGGACACAACTGAGAAATGCCTCTACAGAGATGTGATGTTGGAGAACTATGTGAACCTGGCCTCTGTGG
Seq C2 exon
CAGACAAGAAGCTACAGTGGATGGAAACTCTGAGAATTGTGGAGAGGTCTTCAGTGAATGGTTTTGCCTTAAAACACACATGAGAGCTCAGAATGGAGGGAACATCTTTGAGGGTAATTGTTATGGAAAAGACATCCTCAGTGTGCACAAGGAAGCCTCTATTGGACAGGAACTTTCCAAATTTAATCCATGTGGAAAAGTCTTCACCTTAACTCCAGATCTTGCTGCACATCTTGGAATTCTCAATGCAAGACAACCATACAAATGTAAGGAATGTAGAAAAGGCTTTAAGTATTTTGCAAGCCTTGATAATCACATGGGAATCCACATTGGAGAGAAATTCTGTGAATTTCAGGAATGTAGGAGAGCCATCACTCATTCCTCACACCTAAAGCAGTGTGTAACAGTTCATACTGGAAAGAAATCTAAAAAGACTAAGAAACATGGGAAATCCTTCACTAATTTTTCTCAACTTTCTGCACATGTGAAAATTCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
Hs.626848_MULTIEX1-4/4=3-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCAATCTGCCCTTTTGA
R:
TCCAATAGAGGCTTCCTTGTGC
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development